Merge pull request #98 from jjmccollum/97-positive-proportionsproport… #297
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| name: raxml | |
| on: [push] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.10"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install poetry | |
| run: pipx install poetry | |
| - name: Install dependencies for Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: 'poetry' | |
| - run: poetry install | |
| - name: Testing | |
| run: | | |
| poetry run teiphy -t reconstructed -t defective -t orthographic -m overlap -m lac -s"*" -s T --fill-correctors --no-labels example/ubs_ephesians.xml raxml_example.phy | |
| poetry run teiphy -t reconstructed -t defective -t orthographic -m overlap -m lac -s"*" -s T --fill-correctors --no-labels example/ubs_ephesians.xml raxml_example.fasta | |
| - name: Install Phylogenetics Package | |
| run: | | |
| git clone https://github.com/stamatak/standard-RAxML | |
| cd standard-RAxML | |
| make -f Makefile.gcc | |
| rm *.o | |
| - name: Phylogenetics Run | |
| run: | | |
| cd standard-RAxML | |
| ./raxmlHPC -p 12345 -m MULTIGAMMA -s ../raxml_example.phy -K MK -n T1 | |
| ./raxmlHPC -p 12345 -m MULTIGAMMA -s ../raxml_example.fasta -K MK -n T2 | |