Merge pull request #98 from jjmccollum/97-positive-proportionsproport… #432
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name: stemma | |
on: [push] | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
matrix: | |
python-version: ["3.10"] | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Install poetry | |
run: pipx install poetry | |
- name: Install dependencies for Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v3 | |
with: | |
python-version: ${{ matrix.python-version }} | |
cache: 'poetry' | |
- run: poetry install | |
- name: Testing | |
run: | | |
poetry run teiphy -t reconstructed -t defective -t orthographic -m overlap -m lac -s"*" -s T --fill-correctors --format stemma example/ubs_ephesians.xml stemma_example | |
- name: Install Phylogenetics Packages | |
run: | | |
sudo mkdir /root/bin | |
git clone https://github.com/stemmatic/prep.git | |
cd prep | |
sudo make | |
cd .. | |
git clone https://github.com/stemmatic/stemma.git | |
cd stemma | |
sudo make | |
- name: Phylogenetics Run | |
run: | | |
sudo /root/bin/prep stemma_example | |
sudo /root/bin/stemma stemma_example a 100 | |
sudo /root/bin/soln stemma_example SOLN |