Refactoring of analyze_vars with specifics for .stat_names (#1361)

# Pull Request Fixes #1352 --------- Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Joe Zhu <[email protected]> Co-authored-by: Emily de la Rua <[email protected]>
insightsengineering · Jan 16, 2025 · d048143 · d048143
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diff --git a/.github/workflows/docs.yaml b/.github/workflows/docs.yaml
@@ -40,5 +40,10 @@ jobs:
     secrets:
       REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
     with:
+      deps-installation-method: setup-r-dependencies
+      lookup-refs: |
+        insightsengineering/nestcolor
+        insightsengineering/formatters
+        insightsengineering/rtables
       default-landing-page: latest-tag
       additional-unit-test-report-directories: unit-test-report-non-cran
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -25,7 +25,7 @@ URL: https://insightsengineering.github.io/tern/,
 BugReports: https://github.com/insightsengineering/tern/issues
 Depends:
     R (>= 3.6),
-    rtables (>= 0.6.8)
+    rtables (>= 0.6.11)
 Imports:
     broom (>= 0.5.4),
     car (>= 3.0-13),
@@ -34,7 +34,7 @@ Imports:
     dplyr (>= 1.0.0),
     emmeans (>= 1.10.4),
     forcats (>= 1.0.0),
-    formatters (>= 0.5.8),
+    formatters (>= 0.5.10),
     ggplot2 (>= 3.5.0),
     grid,
     gridExtra (>= 2.0.0),

diff --git a/NAMESPACE b/NAMESPACE
@@ -135,6 +135,7 @@ export(get_formats_from_stats)
 export(get_indents_from_stats)
 export(get_labels_from_stats)
 export(get_smooths)
+export(get_stat_names)
 export(get_stats)
 export(groups_list_to_df)
 export(h_adlb_abnormal_by_worst_grade)

diff --git a/NEWS.md b/NEWS.md
@@ -9,13 +9,19 @@
 * Added `as_list` parameter to `g_lineplot()` to allow users to return the line plot and annotation table elements as a list instead of stacked for more complex customization.
 * Refactored `summarize_change()` to work without `make_afun()` and access all additional function parameter.
 * Added vignette "Understanding `tern` functions" for future reference.
+* Refactored `analyze_vars()` and `a_summary()` to take all options from `?rtables::additional_fun_params`.
+* Added to `analyze_vars()` statistical names that are used by `rtables::as_result_df()`.
+* Merged `compare_vars()` into `analyze_vars()` as overlap was significant.
+* Added the possibility to integrate custom statistical functions to default ones in `analyze_vars()`.
+* Reworked `get_labels_from_stats()` to use a named list of levels for each statistic instead of row names.
 
 ### Bug Fixes
 * Fixed bug in `a_summary()` causing non-unique `row_name` values to occur when multiple statistics are selected for count variables.
 
 ### Miscellaneous
 * Reverted deprecation of quick get functions `summary_formats()` and `summary_labels()`. Added disclaimer about underlying use of `get_stats`.
 * Corrected handling of extra arguments and `NA` for `summarize_change()`.
+* Removed `count_fraction_fixed_dp` exception by assigning it to the result of `count_fraction` with a different format output.
 
 # tern 0.9.6