[skip vbump] upversion to 0.16.0 (#1492)

Fix #1439 ### Blocked by: * insightsengineering/teal.logger#107 * insightsengineering/teal.code#245 ### Summary * Update NEWS and DESCRIPTION * Update deprecation message to `0.16.0` * All badges looks correct * Remove redundant `id` documentation in `init.R` [here](https://github.com/insightsengineering/teal/pull/1492/files#diff-1e8c7b94d7dc2f0d70c4e457124889b5637ba42993015643e5d80be52e3ec912L35-L40) --------- Co-authored-by: m7pr <[email protected]> Co-authored-by: Marcin <[email protected]>
insightsengineering · Feb 24, 2025 · 3c8ffab · 3c8ffab
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Type: Package
 Package: teal
 Title: Exploratory Web Apps for Analyzing Clinical Trials Data
-Version: 0.15.2.9131
+Version: 0.16.0
 Date: 2025-02-12
 Authors@R: c(
     person("Dawid", "Kaledkowski", , "[email protected]", role = c("aut", "cre"),
@@ -50,8 +50,8 @@ Imports:
     rlang (>= 1.0.0),
     shinyjs,
     stats,
-    teal.code (>= 0.6.0),
-    teal.logger (>= 0.3.1),
+    teal.code (>= 0.6.1),
+    teal.logger (>= 0.3.2),
     teal.reporter (>= 0.4.0),
     teal.widgets (>= 0.4.3),
     tools,

diff --git a/NEWS.md b/NEWS.md
@@ -1,20 +1,20 @@
-# teal 0.15.2.9131
+# teal 0.16.0
 
 ### New features
 
-* Possible to call `ui_teal` and `srv_teal` directly in any application by delivering `data` argument as a `reactive` returning `teal_data` object. #669
-* Since introduction of `ui_teal` and `srv_teal` functions `id` argument in `init` is being deprecated. #1438
+* Possible to call `ui_teal` and `srv_teal` directly in any application by delivering `data` argument as a `reactive` returning `teal_data` object (#669).
+* Since introduction of `ui_teal` and `srv_teal` functions, the `id` argument in `init` is being deprecated (#1438).
 * Introduce `ui_session_info` and `srv_session_info` shiny module to create the user session info and teal app lockfile download button.
-* Introduced `teal_transform_module` to provide a way to interactively modify data delivered to `teal_module`'s `server` and to decorate module outputs. #1228 #1384
+* Introduced `teal_transform_module` to provide a way to interactively modify data delivered to `teal_module`'s `server` and to decorate module outputs, along with a vignette to demonstrate its usage (#1228, #1384).
 * Introduced a new argument `once = FALSE` in `teal_data_module` to possibly reload data during a run time.
-* Possibility to download lockfile to restore app session for reproducibility. #479
+* Possibility to download lockfile to restore app session for reproducibility (#479).
 * Datasets which name starts with `.` are ignored when `module`'s `datanames` is set as `"all"`.
-* Added warning when reserved `datanames`, such as `all` and `.raw_data` are being used. 
+* Added warning when reserved `datanames`, such as `all` and `.raw_data` are being used.
 * Added `add_custom_server()` to allow adding custom server logic to the main shiny server function of a teal app.
 
 ### Breaking changes
 
-* Setting `datanames()` on `data` passed to teal application no longer has effect. In order to change `teal_module`'s 
+* Setting `datanames()` on `data` passed to teal application no longer has effect. In order to change `teal_module`'s
 `datanames` one should modify `module$datanames`.
 * `landing_popup_module()` is deprecated. Please use `add_landing_modal()` function to add a landing popup for your teal application.
 * `teal` no longer re-export `%>%`. Please load `library(magrittr)` instead or use `|>` from `base`.
@@ -24,7 +24,7 @@
 ### Enhancement
 
 * Enhanced a system of data validation and a display of error messages.
-* Easier way of to call `javascript` events by setting `$(document).ready(function() { ... })`. #1114
+* Easier way of to call `javascript` events by setting `$(document).ready(function() { ... })` (#1114).
 * Provided progress bar for modules loading and data filtering during teal app startup.
 * Filter mapping display has a separate icon in the tab.
 * Environment of the `data` passed to the `teal_module`'s server consists unfiltered datasets contained in `.raw_data`.

diff --git a/R/dummy_functions.R b/R/dummy_functions.R
@@ -105,3 +105,5 @@ example_module <- function(label = "example teal module",
   attr(ans, "teal_bookmarkable") <- TRUE
   ans
 }
+
+globalVariables("dataname")
diff --git a/R/init.R b/R/init.R
@@ -23,21 +23,17 @@
 #'   the browser window title. Defaults to a title "teal app" with the icon of NEST.
 #'   Can be created using the `build_app_title()` or
 #'   by passing a valid `shiny.tag` which is a head tag with title and link tag.
-#'   This parameter is deprecated. Use `modify_title()` on the teal app object instead.
+#'   This parameter is no longer supported. Use `modify_title()` on the teal app object instead.
 #' @param header (`shiny.tag` or `character(1)`) `r lifecycle::badge("deprecated")` Optionally,
 #'   the header of the app.
-#'   This parameter is deprecated. Use `modify_header()` on the teal app object instead.
+#'   This parameter is no longer supported. Use `modify_header()` on the teal app object instead.
 #' @param footer (`shiny.tag` or `character(1)`) `r lifecycle::badge("deprecated")` Optionally,
 #'   the footer of the app.
-#'   This parameter is deprecated. Use `modify_footer()` on the teal app object instead.
+#'   This parameter is no longer supported. Use `modify_footer()` on the teal app object instead.
 #' @param id `r lifecycle::badge("deprecated")` (`character`) Optionally,
 #'   a string specifying the `shiny` module id in cases it is used as a `shiny` module
-#'   rather than a standalone `shiny` app. This is a legacy feature. Deprecated since v0.15.3
-#'   please use [ui_teal()] and [srv_teal()] instead.
-#' @param id `r lifecycle::badge("deprecated")` (`character`) Optionally,
-#'   a string specifying the `shiny` module id in cases it is used as a `shiny` module
-#'   rather than a standalone `shiny` app. This is a legacy feature. Deprecated since v0.15.3
-#'   please use [ui_teal()] and [srv_teal()] instead.
+#'   rather than a standalone `shiny` app.
+#'   This parameter is no longer supported. Use [ui_teal()] and [srv_teal()] instead.
 #'
 #' @return Named list containing server and UI functions.
 #'
@@ -190,7 +186,7 @@ init <- function(data,
 
   if (lifecycle::is_present(id)) {
     lifecycle::deprecate_soft(
-      when = "0.15.3",
+      when = "0.16.0",
       what = "init(id)",
       details = paste(
         "To wrap `teal` application within other shiny application please use",
@@ -244,7 +240,7 @@ init <- function(data,
 
   if (lifecycle::is_present(title)) {
     lifecycle::deprecate_soft(
-      when = "0.15.3",
+      when = "0.16.0",
       what = "init(title)",
       details = paste(
         "Use `modify_title()` on the teal app object instead.",
@@ -256,7 +252,7 @@ init <- function(data,
   }
   if (lifecycle::is_present(header)) {
     lifecycle::deprecate_soft(
-      when = "0.15.3",
+      when = "0.16.0",
       what = "init(header)",
       details = paste(
         "Use `modify_header()` on the teal app object instead.",
@@ -268,7 +264,7 @@ init <- function(data,
   }
   if (lifecycle::is_present(footer)) {
     lifecycle::deprecate_soft(
-      when = "0.15.3",
+      when = "0.16.0",
       what = "init(footer)",
       details = paste(
         "Use `modify_footer()` on the teal app object instead.",
@@ -281,7 +277,7 @@ init <- function(data,
 
   if (length(landing) == 1L) {
     lifecycle::deprecate_soft(
-      when = "0.15.3",
+      when = "0.16.0",
       what = "landing_popup_module()",
       details = paste(
         "`landing_popup_module()` is deprecated.",

diff --git a/R/landing_popup_module.R b/R/landing_popup_module.R
@@ -20,7 +20,7 @@ landing_popup_module <- function(label = "Landing Popup",
                                  content = NULL,
                                  buttons = modalButton("Accept")) {
   lifecycle::deprecate_soft(
-    when = "0.15.3",
+    when = "0.16.0",
     what = "landing_popup_module()",
     details = paste(
       "landing_popup_module() is deprecated.",

diff --git a/R/module_teal_with_splash.R b/R/module_teal_with_splash.R
@@ -22,9 +22,9 @@ ui_teal_with_splash <- function(id,
                                 header = tags$p(),
                                 footer = tags$p()) {
   lifecycle::deprecate_soft(
-    when = "0.15.3",
+    when = "0.16.0",
     what = "ui_teal_with_splash()",
-    details = "Deprecated, please use `?ui_teal` instead"
+    details = "Please use `?ui_teal` instead"
   )
   ns <- shiny::NS(id)
   fluidPage(
@@ -53,7 +53,7 @@ ui_teal_with_splash <- function(id,
 #' @rdname module_teal_with_splash
 srv_teal_with_splash <- function(id, data, modules, filter = teal_slices()) {
   lifecycle::deprecate_soft(
-    when = "0.15.3",
+    when = "0.16.0",
     what = "srv_teal_with_splash()",
     details = "Deprecated, please use `?srv_teal` instead"
   )

diff --git a/R/show_rcode_modal.R b/R/show_rcode_modal.R
@@ -15,7 +15,7 @@
 #' @export
 show_rcode_modal <- function(title = NULL, rcode, session = getDefaultReactiveDomain()) {
   lifecycle::deprecate_soft(
-    when = "0.15.3",
+    when = "0.16.0",
     what = "show_rcode_modal()",
     details = "This function will be removed in the next release."
   )

diff --git a/R/tdata.R b/R/tdata.R
@@ -52,7 +52,7 @@ as_tdata <- function(...) {
 
 .deprecate_tdata_msg <- function() {
   lifecycle::deprecate_stop(
-    when = "0.15.3",
+    when = "0.16.0",
     what = "tdata()",
     details = paste(
       "tdata has been removed in favour of `teal_data`.\n",

diff --git a/R/utils.R b/R/utils.R
@@ -318,7 +318,7 @@ build_app_title <- function(
     title = "teal app",
     favicon = "https://raw.githubusercontent.com/insightsengineering/hex-stickers/main/PNG/nest.png") {
   lifecycle::deprecate_soft(
-    when = "0.15.3",
+    when = "0.16.0",
     what = "build_app_title()",
     details = "Use `modify_title()` on the object created using the `init`."
   )

diff --git a/man/init.Rd b/man/init.Rd
diff --git a/man/module_teal_with_splash.Rd b/man/module_teal_with_splash.Rd
diff --git a/tests/testthat.R b/tests/testthat.R
@@ -1,3 +1,5 @@
 pkg_name <- "teal"
 library(pkg_name, character.only = TRUE)
 testthat::test_check(pkg_name)
+unlink(".renv")
+unlink("BiocManager")
-Original file line number
+Diff line change
@@ Expand Up / @@ -105,3 +105,5 @@ example_module <- function(label = "example teal module", @@
       attr(ans, "teal_bookmarkable") <- TRUE
       ans
     }
+    globalVariables("dataname")