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var_labels migrate to formatable #152

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merged 8 commits into from
Mar 9, 2022
Merged

var_labels migrate to formatable #152

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41107d6
var_labels migrate to formatable
wangh107 Mar 8, 2022
02cee7c
import var_labels<- and with_label
wangh107 Mar 8, 2022
38be20e
depending on tern
wangh107 Mar 8, 2022
7d376eb
update staged_dependencies
wangh107 Mar 8, 2022
0705b26
update description
wangh107 Mar 8, 2022
788cf8c
remove formatable from staged_dependency, import labels funcs from tern
wangh107 Mar 9, 2022
dde7c3b
imports rtables and tern instead of depends
wangh107 Mar 9, 2022
a3388fc
Update DESCRIPTION
BFalquet Mar 9, 2022
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6 changes: 3 additions & 3 deletions DESCRIPTION
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Expand Up @@ -14,17 +14,17 @@ Description: Standard Table, Listings, and Graphs (TLG) library used in
clinical trials.
License: file LICENSE
Depends:
R (>= 4.0.0)
R (>= 4.0.0)
Imports:
rtables,
tern,
assertthat,
checkmate,
dm,
dplyr,
magrittr,
methods,
rlang,
rtables,
tern,
tibble,
tidyr
Suggests:
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4 changes: 3 additions & 1 deletion NAMESPACE
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Expand Up @@ -78,9 +78,11 @@ importFrom(dplyr,select)
importFrom(magrittr,"%>%")
importFrom(methods,is)
importFrom(rlang,sym)
importFrom(rtables,var_labels)
importFrom(stats,setNames)
importFrom(tern,`var_labels<-`)
importFrom(tern,explicit_na)
importFrom(tern,sas_na)
importFrom(tern,var_labels)
importFrom(tern,with_label)
importFrom(tibble,tribble)
importFrom(tidyr,pivot_wider)
2 changes: 1 addition & 1 deletion R/standard_data_preprocessing.R
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Expand Up @@ -298,7 +298,7 @@ filter_adcm_anl01fl <- function(adam_db) {
}

#' Creating Necessary Columns for `aet01`
#'
#' @importFrom tern with_label
#' @inheritParams gen_args
#'
mutate_for_aet01 <- function(adam_db) {
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5 changes: 3 additions & 2 deletions R/utils.R
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Expand Up @@ -11,7 +11,7 @@ globalVariables(c(
#' @param vars variable names in data frame `df`
#'
#' @importFrom assertthat assert_that
#' @importFrom rtables var_labels
#' @importFrom tern var_labels
#' @export
var_labels_for <- function(df, vars) {
assert_that(all(vars %in% names(df)))
Expand Down Expand Up @@ -177,6 +177,7 @@ reorder_levels_params <- function(df, paramcd_levels) {
#'
#' @importFrom dplyr select
#' @importFrom tidyr pivot_wider
#' @importFrom tern `var_labels<-`
#'
#' @return (`data.frame`)
#' @export
Expand Down Expand Up @@ -278,7 +279,7 @@ get_db_data <- function(db, ...) { # TODO: revisit


#' Retrieve Synthetic Test Data Used For Examples
#'
#' @importFrom tern with_label
#' @export
syn_test_data <- function() {
sd <- scda::synthetic_cdisc_data("rcd_2021_03_22")
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1 change: 0 additions & 1 deletion staged_dependencies.yaml
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@@ -1,4 +1,3 @@
---
current_repo:
repo: insightsengineering/chevron
host: https://github.com
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