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Update README.md
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ugurdogrusoz authored May 31, 2022
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Expand Up @@ -269,9 +269,9 @@ let imageInfo = result["image"]; // in `base64uri` for `png` and `jpg` and i

- SyBLaRS also takes any node dimensions into account for layout in SBML, GraphML and JSON file formats. This information should be provided via the layout extension in SBML files, and via `width` and `height` data attributes of each node in GraphML and JSON files (see the [sample files](https://github.com/iVis-at-Bilkent/syblars/tree/main/public/samples)). Any dimension data is ignored for the SBGNML file format, however, as the third-party [stylesheet](https://github.com/iVis-at-Bilkent/cytoscape-sbgn-stylesheet) used for rendering SBGNML maps has fixed/pre-defined dimensions for each node type.

- Compound/nested graph structures are supported in all file formats. We recommend that you use the fCoSE layout style for best results on graphs with compound structures.
- Compound/nested graph structures are supported in all file formats. We recommend that you use the [fCoSE](https://github.com/iVis-at-Bilkent/cytoscape.js-fcose) layout style for best results on graphs with compound structures.

- Performing a layout emphasizing the clustering/grouping of nodes is supported only with GraphML and JSON formats. The cluster each node belongs to should be defined via the `clusterID` data attribute of each node (see the corresponding [sample files](https://github.com/iVis-at-Bilkent/syblars/tree/main/public/samples)). CiSE layout style should be used for layout to explicitly show the clustering available in the graph.
- Performing a layout emphasizing the clustering/grouping of nodes is supported only with GraphML and JSON formats. The cluster each node belongs to should be defined via the `clusterID` data attribute of each node (see the corresponding [sample files](https://github.com/iVis-at-Bilkent/syblars/tree/main/public/samples)). [CiSE](https://github.com/iVis-at-Bilkent/cytoscape.js-cise) layout style should be used for layout to explicitly show the clustering available in the graph.

- The `x` and `y` coordinates of a node in the resulting layout information indicate the '*center*' coordinates of the node.

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