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added example 2: sensitivity analysis
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,144 @@ | ||
| { | ||
| "metabolites":[ | ||
| { | ||
| "id":"Substrate", | ||
| "name":"", | ||
| "compartment":"" | ||
| }, | ||
| { | ||
| "id":"Intermediate", | ||
| "name":"", | ||
| "compartment":"" | ||
| }, | ||
| { | ||
| "id":"CO2", | ||
| "name":"", | ||
| "compartment":"" | ||
| }, | ||
| { | ||
| "id":"Byproduct", | ||
| "name":"", | ||
| "compartment":"" | ||
| }, | ||
| { | ||
| "id":"ATP", | ||
| "name":"", | ||
| "compartment":"" | ||
| }, | ||
| { | ||
| "id":"Precursor", | ||
| "name":"", | ||
| "compartment":"" | ||
| }, | ||
| { | ||
| "id":"Biomass", | ||
| "name":"", | ||
| "compartment":"" | ||
| } | ||
| ], | ||
| "reactions":[ | ||
| { | ||
| "id":"R1", | ||
| "name":"", | ||
| "metabolites":{ | ||
| "Substrate":1 | ||
| }, | ||
| "lower_bound":1, | ||
| "upper_bound":100, | ||
| "gene_reaction_rule":"" | ||
| }, | ||
| { | ||
| "id":"R2", | ||
| "name":"", | ||
| "metabolites":{ | ||
| "CO2":1, | ||
| "Intermediate":1, | ||
| "Substrate":-1 | ||
| }, | ||
| "lower_bound":0, | ||
| "upper_bound":100, | ||
| "gene_reaction_rule":"" | ||
| }, | ||
| { | ||
| "id":"R3", | ||
| "name":"", | ||
| "metabolites":{ | ||
| "ATP":1, | ||
| "Byproduct":1, | ||
| "Intermediate":-1 | ||
| }, | ||
| "lower_bound":-1000000.0, | ||
| "upper_bound":100, | ||
| "gene_reaction_rule":"" | ||
| }, | ||
| { | ||
| "id":"R4", | ||
| "name":"", | ||
| "metabolites":{ | ||
| "ATP":2, | ||
| "CO2":1, | ||
| "Intermediate":-1 | ||
| }, | ||
| "lower_bound":0, | ||
| "upper_bound":100, | ||
| "gene_reaction_rule":"" | ||
| }, | ||
| { | ||
| "id":"R5", | ||
| "name":"", | ||
| "metabolites":{ | ||
| "Intermediate":-1, | ||
| "Precursor":1 | ||
| }, | ||
| "lower_bound":-1000000.0, | ||
| "upper_bound":100, | ||
| "gene_reaction_rule":"" | ||
| }, | ||
| { | ||
| "id":"R6", | ||
| "name":"", | ||
| "metabolites":{ | ||
| "ATP":-1, | ||
| "Biomass":1, | ||
| "Precursor":-1 | ||
| }, | ||
| "lower_bound":0, | ||
| "upper_bound":100, | ||
| "gene_reaction_rule":"" | ||
| }, | ||
| { | ||
| "id":"R7", | ||
| "name":"", | ||
| "metabolites":{ | ||
| "Biomass":-1 | ||
| }, | ||
| "lower_bound":0, | ||
| "upper_bound":100, | ||
| "gene_reaction_rule":"" | ||
| }, | ||
| { | ||
| "id":"R8", | ||
| "name":"", | ||
| "metabolites":{ | ||
| "CO2":-1 | ||
| }, | ||
| "lower_bound":0, | ||
| "upper_bound":100, | ||
| "gene_reaction_rule":"" | ||
| }, | ||
| { | ||
| "id":"R9", | ||
| "name":"", | ||
| "metabolites":{ | ||
| "Byproduct":-1 | ||
| }, | ||
| "lower_bound":0, | ||
| "upper_bound":100, | ||
| "gene_reaction_rule":"" | ||
| } | ||
| ], | ||
| "genes":[], | ||
| "id":"toy_model", | ||
| "compartments":{}, | ||
| "version":"1" | ||
| } |
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