Code

Implement checkpoint/restart for RBC#800

Code

Open

rupertnash wants to merge 49 commits intomainhemelb-codes/hemelb:mainfrom checkpointhemelb-codes/hemelb:checkpointCopy head branch name to clipboard

+10,065-9,739

Commits

Commits on May 20, 2024

• tidy up utility functions

  rupertnash

  committed
  cd8c08c

  Copy full SHA for cd8c08c

• Simplify timers

  rupertnash

  committed
  46f5d90

  Copy full SHA for 46f5d90

• get colloids module compiling again

  rupertnash

  committed
  2b813f0

  Copy full SHA for 2b813f0

• slight modernisation of log

  rupertnash

  committed
  5622a4f

  Copy full SHA for 5622a4f

• Improve timers a little

  rupertnash

  committed
  cf1dca0

  Copy full SHA for cf1dca0

• Separate checkpointing out into its own Actor and update XML

  rupertnash

  committed
  1e48d49

  Copy full SHA for 1e48d49

• tidy up some numerical bits in util

  rupertnash

  committed
  778875c

  Copy full SHA for 778875c

• Modernise SiteDataBare a bit

  rupertnash

  committed
  9d2ecf2

  Copy full SHA for 9d2ecf2

• Add range for iteration of xml children

  rupertnash

  committed
  7fdb450

  Copy full SHA for 7fdb450

• Update to TinyXML-2

  rupertnash

  committed
  f96bf4d

  Copy full SHA for f96bf4d

• Separate the XML->SimConfig into own class

  rupertnash

  committed
  546b399

  Copy full SHA for 546b399

• Ensure Catch2 version found is 2 not 3

  rupertnash

  committed
  f2e98b6

  Copy full SHA for f2e98b6

• CMake: allow integers to be configured thru as such

  rupertnash

  committed
  5f337c4

  Copy full SHA for 5f337c4

• Tidy CMake and use build_info more that macros

  rupertnash

  committed
  de7a8a4

  Copy full SHA for de7a8a4

• properly conceptify enumerate iterators

  rupertnash

  committed
  a94a3c3

  Copy full SHA for a94a3c3

• resolve XdrSerialisation optional

  rupertnash

  committed
  93b119e

  Copy full SHA for 93b119e

• Bit of IWYU

  rupertnash

  committed
  217f01b

  Copy full SHA for 217f01b

• Fix bug in file pressure iolet

  rupertnash

  committed
  79ec2ca

  Copy full SHA for 79ec2ca

• Have LocalPropertyOutput make a bit more data available to users for checkpointing

  rupertnash

  committed
  f8efea6

  Copy full SHA for f8efea6

• Fix null terminator bug in time pattern

  rupertnash

  committed
  5a50065

  Copy full SHA for 5a50065

• Have timestep start at zero like any sane default

  rupertnash

  committed
  f4045de

  Copy full SHA for f4045de

• tweak xml relative -> abs path

  rupertnash

  committed
  eada3a0

  Copy full SHA for eada3a0

• Allow customisation of XML attribute serialisation

  rupertnash

  committed
  3db7b99

  Copy full SHA for 3db7b99

• Split SimConfigReader into its own files, add SimConfigWriter

  rupertnash

  committed
  4fc2828

  Copy full SHA for 4fc2828

• Rationalise RBC PRNGs

  rupertnash

  committed
  b0608b0

  Copy full SHA for b0608b0

• Geometry tool: write xml in hexfloat to avoid loss of precision

  rupertnash

  committed
  615246d

  Copy full SHA for 615246d

• Add locale for correctly parsing hexadecimal floating point number

  rupertnash

  committed
  a914f2a

  Copy full SHA for a914f2a

• Make RBC cell insert seed required

  rupertnash

  committed
  ad7e216

  Copy full SHA for ad7e216

• Remove stress type from configuration #801

  rupertnash

  committed
  3043c7f

  Copy full SHA for 3043c7f

• minor mpi wrapper tidy to silence warnings

  rupertnash

  committed
  4e1f589

  Copy full SHA for 4e1f589

• Remove cruft from test XML

  rupertnash

  committed
  f9c0c53

  Copy full SHA for f9c0c53

• Mark the colloids as unmaintained

  rupertnash

  committed
  c76ef71

  Copy full SHA for c76ef71

• Have XML reading "consume" the doc to ensure no unknown stuff

  rupertnash

  committed
  6421b13

  Copy full SHA for 6421b13

• Silence warnings from HASSERT macro

  rupertnash

  committed
  17df2ab

  Copy full SHA for 17df2ab

• Use byte for raw data not char

  rupertnash

  committed
  c941bc5

  Copy full SHA for c941bc5

• Tidy format description namespace

  rupertnash

  committed
  cdebe86

  Copy full SHA for cdebe86

• Switch from mmHg to Pa for pressure inputs/outputs

  rupertnash

  committed
  b63d7de

  Copy full SHA for b63d7de

• Update extraction to write in lattice units and include scaling to physical units in header

  rupertnash

  committed
  374ef27

  Copy full SHA for 374ef27

• Add output of RBC barycentres

  rupertnash

  committed
  4e7fa05

  Copy full SHA for 4e7fa05

• Be consistent with centre/center

  rupertnash

  committed
  ac01628

  Copy full SHA for ac01628

• Remove UB in wall cell pair iterator

  rupertnash

  committed
  e2d3116

  Copy full SHA for e2d3116

• Tidy MPI CMake

  rupertnash

  committed
  264741f

  Copy full SHA for 264741f

• Fix restart XML extraction path with extra quote marks

  rupertnash

  committed
  462e85c

  Copy full SHA for 462e85c

• Rename XML element for rbc templates from "cells" to "templates"

  rupertnash

  committed
  af08256

  Copy full SHA for af08256

Commits on Jun 5, 2024

• Switch domain and LBM to use indexes not counts for sites of different collision types

  rupertnash

  committed
  9887f89

  Copy full SHA for 9887f89

• Partially de-template StabilityTester and make master non-templated

  rupertnash

  committed
  f99030b

  Copy full SHA for f99030b

• Finish de-templating sim master, make RBC cope and move path manager into config where it belongs

  rupertnash

  committed
  de0c2fd

  Copy full SHA for de0c2fd

• Minor MPI use tidying

  rupertnash

  committed
  b4c1ba7

  Copy full SHA for b4c1ba7

Commits on Jun 6, 2024

• Rename SimulationMaster to Controller

  rupertnash

  committed
  9d1cece

  Copy full SHA for 9d1cece