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[vds/combiner] Fix truncation of PL in GVCF import with haploid calls #14577

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merged 2 commits into from
Jun 17, 2024
Merged

[vds/combiner] Fix truncation of PL in GVCF import with haploid calls #14577

merged 2 commits into from
Jun 17, 2024

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chrisvittal
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patrick-schultz
patrick-schultz requested changes Jun 11, 2024
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Looks good, just needs a test

@hail-ci-robot hail-ci-robot merged commit 63db10a into hail-is:main Jun 17, 2024
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chrisvittal added a commit that referenced this pull request Jul 30, 2024
@chrisvittal
[vds/combiner] Fix truncation of PL in GVCF import with haploid calls (…
c33eaa8 
…#14577)
chrisvittal added a commit that referenced this pull request Jul 30, 2024
@chrisvittal
Release 0.2.130.post1
ab9a7ba 
This patch version implements necessary changes for working with Variant
Datasets with haploid calls, as well as one critical correctness bug,
the substantial backports are:

   - [vds/combiner] Stop dropping GT in reference data during gvcf import (#14560)
   - [vds/combiner] Fix truncation of PL in GVCF import with haploid calls (#14577)
chrisvittal added a commit that referenced this pull request Jul 30, 2024
@chrisvittal
[vds/combiner] Fix truncation of PL in GVCF import with haploid calls (…
47a4f74 
…#14577)
chrisvittal added a commit that referenced this pull request Jul 30, 2024
@chrisvittal
Release 0.2.130.post1
61bdb38 
This patch version implements necessary changes for working with Variant
Datasets with haploid calls, as well as one critical correctness bug,
the substantial backports are:

   - [vds/combiner] Stop dropping GT in reference data during gvcf import (#14560)
   - [vds/combiner] Fix truncation of PL in GVCF import with haploid calls (#14577)
chrisvittal added a commit that referenced this pull request Jul 30, 2024
@chrisvittal
Release 0.2.130.post1
0a2376f 
This patch version implements necessary changes for working with Variant
Datasets with haploid calls. The substantial backports are:

   - [vds/combiner] Stop dropping GT in reference data during gvcf import (#14560)
   - [vds/combiner] Fix truncation of PL in GVCF import with haploid calls (#14577)
chrisvittal added a commit that referenced this pull request Aug 7, 2024
@chrisvittal
Release 0.2.130.post1
cb67d0a 
This patch version implements necessary changes for working with Variant
Datasets with haploid calls. The substantial backports are:

   - [vds/combiner] Stop dropping GT in reference data during gvcf import (#14560)
   - [vds/combiner] Fix truncation of PL in GVCF import with haploid calls (#14577)
chrisvittal added a commit that referenced this pull request Aug 8, 2024
@chrisvittal
Release 0.2.130.post1
c69cd67 
This patch version implements necessary changes for working with Variant
Datasets with haploid calls. The substantial backports are:

   - [vds/combiner] Stop dropping GT in reference data during gvcf import (#14560)
   - [vds/combiner] Fix truncation of PL in GVCF import with haploid calls (#14577)
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@patrick-schultz patrick-schultz patrick-schultz approved these changes

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@chrisvittal @patrick-schultz @hail-ci-robot