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updated readme, intro and imprint
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haesleinhuepf committed Jan 23, 2022
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4 changes: 2 additions & 2 deletions docs/imprint.md
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Dr. rer. medic. Robert Haase\
DFG Cluster of Excellence “Physics of Life”, TU Dresden\
Am Tatzberg 47/49\
Arnoldstrasse 18\
01307 Dresden

### Kontakt
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### Verantwortlich für den Inhalt nach § 55 Abs. 2 RStV:
Dr. rer. medic. Robert Haase\
DFG Cluster of Excellence “Physics of Life”, TU Dresden\
Am Tatzberg 47/49\
Arnoldstrasse 18\
01307 Dresden

# Haftungsausschluss
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# Bio-image Analysis Notebooks

This collection of [Python](https://www.python.org/)
[jupyter](https://jupyter.org/) notebooks are written for Python beginners who are interested in analysing images acquired using modern fluorescence microscopes.
[jupyter](https://jupyter.org/) notebooks are written for Python beginners who are interested in
analysing three dimensional images acquired using modern fluorescence microscopes.
The journey starts with Python basics and introduces general concepts of bio-image analysis.
Special emphasis is put on image data showing cells and nuclei forming tissues and organisms.
Demonstrations of basic principles are done in two-dimensional image data and more sophisticated examples demonstrate the basic principles in three-dimensional image data, potentially also over time.
Demonstrations of basic principles are done in two-dimensional image data and more sophisticated examples demonstrate
the basic principles in three-dimensional image data, potentially also over time.

The reader may note that we start with basic python, transit towards standard libraries for image processing such as
[scikit-image](http://scikit-image.org/) and [numpy](https://numpy.org/), and from there use increasingly GPU-acceleration libraries such as
[pyclesperanto](https://github.com/clEsperanto/pyclesperanto_prototype).
The more the content shifts towards three dimensional biological image processing and life-sciences specific quantiative analysis,
the more we make use of custom open source libraries. These libraries are specialized for processing imaging data showing
cells and tissues acquired with fluorescence microscopy.

## Material origin

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2 changes: 1 addition & 1 deletion readme.md
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Expand Up @@ -4,4 +4,4 @@ This repository contains a collection Python Jupyter notebooks exlaining bio-ima

https://haesleinhuepf.github.io/BioImageAnalysisNotebooks

It is build with [Jupyter book](https://jupyterbook.org/intro.html).
It is maintained using [Jupyter lab](https://jupyterlab.readthedocs.io/en/stable/) and build using [Jupyter book](https://jupyterbook.org/intro.html).

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