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inferExp step fails with mixed protocol BAM file #71

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emi80 opened this issue May 16, 2023 · 1 comment
Closed

inferExp step fails with mixed protocol BAM file #71

emi80 opened this issue May 16, 2023 · 1 comment

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@emi80
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emi80 commented May 16, 2023

Reading reference gene model genomic.bed ... Done
Loading SAM/BAM file ...  Finished
Total 0 usable reads were sampled
------ STATS ------
Protocol: Mixture
Traceback (most recent call last):
  File "/users/rg/avlot/.nextflow/assets/guigolab/grape-nf/bin/grape_infer_experiment.py", line 124, in <module>
    main()
  File "/users/rg/avlot/.nextflow/assets/guigolab/grape-nf/bin/grape_infer_experiment.py", line 118, in main
    print >>sys.stderr, 'Fraction of reads explained by other combinations: %.4f' % other
TypeError: float argument required, not str
@emi80
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emi80 commented May 16, 2023

this may happen when there are no mapped reads in the BAM file

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