Set R_BIOC_VERSION
env variable used by pak
#7
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As mentioned in #6, the Bioc-version can be inconsistent with the one requested after the
setup-r-dependencies
step. I suspect this is due to the use of pak insetup-r-dependencies
, which sets its own package repository settings (seepak::repo_get()
) and defaults to Bioc-release, thereby ignoring the configuration done by thesetup-bioc
step.This PR sets the environment variable
R_BIOC_VERSION
environment variable during thesetup-bioc
step, to ensure that pak will use the requested Bioc-version in subsequent installation steps.See also r-lib/pak#309 (comment)