Convert packagedocs to pkgdown

.Rbuildignore

@@ -31,3 +31,7 @@ ggduo_paper.txt
 ^scripts/
 ^revdep$
 ^\.github/
+^_pkgdown\.yml$
+^docs$
+^pkgdown$
+^\.github$

.github/.gitignore

@@ -0,0 +1 @@
+*.html

.github/workflows/R-CMD-check.yaml

@@ -0,0 +1,97 @@
+on:
+  push:
+    branches:
+      - master
+  pull_request:
+    branches:
+      - master
+
+name: R-CMD-check
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: macOS-latest,   r: 'devel'}
+          - {os: windows-latest, r: 'devel'}
+          - {os: macOS-latest,   r: 'release'}
+          - {os: windows-latest, r: 'release'}
+          - {os: ubuntu-16.04,   r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
+          - {os: macOS-latest,   r: 'oldrel'}
+          - {os: windows-latest, r: 'oldrel'}
+          - {os: ubuntu-16.04,   r: 'oldrel',  rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
+
+    env:
+      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
+      RSPM: ${{ matrix.config.rspm }}
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+
+    steps:
+      - uses: actions/checkout@v2
+
+      - uses: r-lib/actions/setup-r@master
+        with:
+          r-version: ${{ matrix.config.r }}
+
+      - uses: r-lib/actions/setup-pandoc@master
+
+      - name: Query dependencies
+        run: |
+          install.packages('remotes')
+          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
+          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
+        shell: Rscript {0}
+
+      - name: Cache R packages
+        if: runner.os != 'Windows'
+        uses: actions/cache@v1
+        with:
+          path: ${{ env.R_LIBS_USER }}
+          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
+          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
+
+      - name: Install system dependencies
+        if: runner.os == 'Linux'
+        env:
+          RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
+        run: |
+          Rscript -e "remotes::install_github('r-hub/sysreqs')"
+          sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
+          sudo -s eval "$sysreqs"
+
+      - name: Install dependencies
+        run: |
+          remotes::install_deps(dependencies = TRUE)
+          remotes::install_cran("rcmdcheck")
+        shell: Rscript {0}
+
+      - name: Session info
+        run: |
+          options(width = 100)
+          pkgs <- installed.packages()[, "Package"]
+          sessioninfo::session_info(pkgs, include_base = TRUE)
+        shell: Rscript {0}
+
+      - name: Check
+        env:
+          _R_CHECK_CRAN_INCOMING_: false
+        run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
+        shell: Rscript {0}
+
+      - name: Show testthat output
+        if: always()
+        run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
+        shell: bash
+
+      - name: Upload check results
+        if: failure()
+        uses: actions/upload-artifact@master
+        with:
+          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
+          path: check

.github/workflows/pkgdown.yaml

@@ -0,0 +1,48 @@
+on:
+  push:
+    branches:
+      - master
+      - pkgdown
+
+
+name: pkgdown
+
+jobs:
+  pkgdown:
+    runs-on: macOS-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    steps:
+      - uses: actions/checkout@v2
+
+      - uses: r-lib/actions/setup-r@master
+
+      - uses: r-lib/actions/setup-pandoc@master
+
+      - name: Query dependencies
+        run: |
+          install.packages('remotes')
+          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
+          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
+        shell: Rscript {0}
+
+      - name: Cache R packages
+        uses: actions/cache@v1
+        with:
+          path: ${{ env.R_LIBS_USER }}
+          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
+          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
+
+      - name: Install dependencies
+        run: |
+          install.packages("remotes")
+          remotes::install_deps(dependencies = TRUE)
+          remotes::install_dev("pkgdown")
+        shell: Rscript {0}
+
+      - name: Install package
+        run: R CMD INSTALL .
+
+      - name: Deploy package
+        run: pkgdown::deploy_to_branch(new_process = FALSE)
+        shell: Rscript {0}

.gitignore

@@ -18,3 +18,5 @@ vignettes/rd_files/
 _gh-pages
 ggduo_paper.txt
 .httr-oauth
+docs
+inst/doc

.travis.yml

@@ -21,15 +21,15 @@ jobs:
       r_binary_packages:
         # install locally to avoid rev dep
         - covr # code coverage check
-      r_github_packages:
-        - schloerke/travisDrat
-        - rstudio/crosstalk
+      # r_github_packages:
+      #   - schloerke/travisDrat
+      #   - rstudio/crosstalk
       script:
         - Rscript -e 'remotes::install_local()'
         - Rscript -e 'covr::codecov()'
-        - CAN_PRINT=TRUE Rscript -e "packagedocs::deploy_travis(valid_branches = 'dev', push_branch = 'gh-pages-dev')"
-        - CAN_PRINT=TRUE Rscript -e "packagedocs::deploy_travis(valid_branches = 'master')"
-        - Rscript -e "travisDrat::deploy_drat(valid_branches = 'master', drat_repo = 'schloerke/drat')"
+        # - CAN_PRINT=TRUE Rscript -e "packagedocs::deploy_travis(valid_branches = 'dev', push_branch = 'gh-pages-dev')"
+        # - CAN_PRINT=TRUE Rscript -e "packagedocs::deploy_travis(valid_branches = 'master')"
+        # - Rscript -e "travisDrat::deploy_drat(valid_branches = 'master', drat_repo = 'schloerke/drat')"
 
 notifications:
   email:

DESCRIPTION

@@ -57,9 +57,10 @@ Suggests:
     rmarkdown,
     roxygen2,
     testthat,
-    crosstalk
+    crosstalk,
+    knitr
 Roxygen: list(markdown = FALSE)
 RoxygenNote: 7.1.0
-VignetteBuilder: packagedocs
+VignetteBuilder: knitr
 SystemRequirements: openssl
 Encoding: UTF-8

R/ggpairs.R

@@ -906,7 +906,6 @@ add_and_overwrite_aes <- function(current, new) {
 #' Replace the fill with the color and make color NULL.
 #'
 #' @param current the current aesthetics
-#' @keywords internal
 #' @export
 mapping_color_to_fill <- function(current) {
   if (is.null(current)) {

README.md

@@ -2,7 +2,7 @@
 
 
 <!-- badges: start -->
-[![R build status](https://github.com/ggobi/ggally/workflows/R-CMD-check/badge.svg)](https://github.com/ggobi/ggally)
+[![R build status](https://github.com/ggobi/ggally/workflows/R-CMD-check/badge.svg)](https://github.com/ggobi/ggally/actions)
 [![codecov.io](https://codecov.io/github/ggobi/ggally/coverage.svg?branch=master)](https://codecov.io/github/ggobi/ggally?branch=master)
 [![CRAN_Status_Badge](http://www.r-pkg.org/badges/version/GGally)](https://cran.r-project.org/package=GGally)
 [![](http://cranlogs.r-pkg.org/badges/GGally)](https://cran.r-project.org/package=GGally)

_pkgdown.yml

@@ -0,0 +1,150 @@
+url: https://ggobi.github.io/ggally
+
+# template:
+#   params:
+#     docsearch:
+#       api_key: API_KEY
+#       index_name: INDEX_NAME
+
+
+reference:
+- title: Plot Matrix
+  # desc: >
+  #   here
+  #   here
+  #   here
+  contents:
+  - '`ggmatrix`'
+  - '`ggpairs`'
+  - '`ggduo`'
+  - '`ggscatmat`'
+  - '`ggfacet`'
+  - '`ggts`'
+
+- title: "ggmatrix() Helpers"
+  contents:
+  - '`wrap_fn_with_param_arg`'
+  - '`eval_data_col`'
+  - '`print.ggmatrix`'
+  - '`ggmatrix_gtable`'
+  - '`grab_legend`'
+  - '`putPlot`'
+  - '`getPlot`'
+  - '`+.gg`'
+  - '`mapping_color_to_fill`'
+  - '`mapping_swap_x_y`'
+  - '`fn_switch`'
+  - '`str.ggmatrix`'
+  - '`print_if_interactive`'
+  - '`ggmatrix_progress`'
+
+- title: Modeling Diagnostics
+  contents:
+  - '`ggnostic`'
+  - '`broomify`'
+  - '`ggally_nostic_cooksd`'
+  - '`ggally_nostic_hat`'
+  - '`ggally_nostic_line`'
+  - '`ggally_nostic_resid`'
+  - '`ggally_nostic_se_fit`'
+  - '`ggally_nostic_sigma`'
+  - '`ggally_nostic_std_resid`'
+
+- title: Major Plotting Functions
+  contents:
+  - '`ggcoef`'
+  - '`ggcorr`'
+  - '`ggparcoord`'
+  - '`ggsurv`'
+
+- title: High-Level Plots (Bivariate - Continuous)
+  contents:
+  - '`ggally_autopoint`'
+  - '`ggally_cor`'
+  - '`ggally_density`'
+  - '`ggally_points`'
+  - '`ggally_smooth`'
+
+- title: High-Level Plots (Bivariate - Combination)
+  contents:
+  - '`ggally_autopoint`'
+  - '`ggally_box`'
+  - '`ggally_denstrip`'
+  - '`ggally_dot`'
+  - '`ggally_dot_and_box`'
+  - '`ggally_facetdensity`'
+  - '`ggally_facethist`'
+
+- title: High-Level Plots (Bivariate - Discrete)
+  contents:
+  - '`ggally_autopoint`'
+  - '`ggally_facetbar`'
+  - '`ggally_ratio`'
+
+- title: High-Level Plots (Univariate - Continuous)
+  contents:
+  - '`ggally_barDiag`'
+  - '`ggally_densityDiag`'
+
+- title: High-Level Plots (Univariate - Discrete)
+  contents:
+  - '`ggally_barDiag`'
+  - '`ggally_densityDiag`'
+  - '`ggally_barDiag`'
+
+- title: High-Level Plots (Text)
+  contents:
+  - '`ggally_statistic`'
+  - '`ggally_text`'
+  - '`signif_stars`'
+
+- title: High-Level Plots (Misc.)
+  contents:
+  - '`ggally_blank`'
+  - '`ggally_diagAxis`'
+  - '`ggally_na`'
+  - '`gglegend`'
+
+- title: Glyph Plot
+  contents:
+  - '`glyphs`'
+  - '`add_ref_boxes`'
+  - '`add_ref_lines`'
+  - '`glyphplot`'
+  # - '`rescale01`'
+
+- title: Network Plots
+  contents:
+  - '`ggnet`'
+  - '`ggnet2`'
+  - '`ggnetworkmap`'
+
+- title: Datasets
+  contents:
+  - '`australia_PISA2012`'
+  - '`flea`'
+  - '`happy`'
+  - '`nasa`'
+  - '`pigs`'
+  - '`psychademic`'
+  - '`twitter_spambots`'
+
+- title: Plot Utilities
+  contents:
+  - '`brew_colors`'
+  - '`find_plot_type`'
+  - '`is_horizontal`'
+  - '`lowertriangle`'
+  - '`mapping_string`'
+  - '`model_response_variables`'
+  - '`scag_order`'
+  - '`scatmat`'
+  - '`singleClassOrder`'
+  - '`skewness`'
+  - '`uppertriangle`'
+
+- title: Legacy
+  contents:
+  - '`v1_ggmatrix_theme`'
+  - '`ggally_cor_v1_5`'
+

vignettes/.gitignore

@@ -0,0 +1,2 @@
+*.html
+*.R