RNA-SeQC 2.3.0
Other Changes:
- Changed how 3' bias is calculated:
- Only genes with a median coverage of 100 within 50 bases of their coverage peak will be considered
- The threshold cannot be changed, but that window is equal to the size of
--window-size
- The threshold cannot be changed, but that window is equal to the size of
- Drop coverage on both ends of genes until a base is encountered which is in the 6th percentile *(or above) of coverage for that gene
- Only genes with a median coverage of 100 within 50 bases of their coverage peak will be considered
- Bias is based on the median expression at the (trimmed) ends of the gene instead of the mean