sci-biology/deeptools: version bump 3.5.6, add tests

Signed-off-by: Michael Schubert <[email protected]>

sci-biology/deeptools/Manifest

@@ -1,2 +1,3 @@
 DIST deeptools-3.5.0.tar.gz 62553343 BLAKE2B a8cd1520b96c50ad36667405677cf422a74376d88f0716f83cc0c6f58d01aefcf47ac1b862aa98b8801e61445d59831dbc9246660e2f41a5b3e0ed3d6573ad50 SHA512 699734c8a863ec76dfead728e3227bbe3ec04d62e91f447269a6aa8406d627ff618837b85ab2e31cc635c671e1d62230c4db0992106bbe921281b81164387b38
 DIST deeptools-3.5.1.tar.gz 62552044 BLAKE2B 3c785ba478b88fbbe7ba2617e2d05984b8a897f787e85d6f8f144f596af07b9e16ba920c8adee35efc4b1b067f255e81f66cf746aaea43e5ee61c23c4d15c9c3 SHA512 f7618f1a51b975d42712a38e13e9ab2ddfeafffe24d81fdab41f1ef7c2e44fd09da0351210670b0036bf72e7af11b679417275adce300ae9fabe4b5339ee9810
+DIST deeptools-3.5.6.tar.gz 62513989 BLAKE2B 089f97bbac4ffcaab24adfa564981f62c470eb498dd3ebab9f4703ff15f0637fce30629d18a8f460c30c8e842f8692ee5e19ff3f04767aa5301b4ee41a671d36 SHA512 88f69253d49912af6344814fb02381274efaf485c29fdb1c99cbeec143a74816224a19d5793b3b92772850d9691e4cba712d2b6e284733cf16fb09ab1896c294

sci-biology/deeptools/deeptools-3.5.6.ebuild

@@ -0,0 +1,35 @@
+# Copyright 1999-2025 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_USE_PEP517=setuptools
+PYTHON_COMPAT=( python3_{11..12} )
+
+inherit distutils-r1
+
+DESCRIPTION="Extract reads from BAM files, normalize, draw figures, convert BAM to bigWig"
+HOMEPAGE="https://github.com/deeptools/deepTools"
+SRC_URI="https://github.com/deeptools/deepTools/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64"
+
+RDEPEND="
+	>=sci-biology/deeptools-intervals-0.1.8[${PYTHON_USEDEP}]
+	>=dev-python/numpy-1.9.0[${PYTHON_USEDEP}]
+	>=dev-python/numpydoc-0.5[${PYTHON_USEDEP}]
+	>=dev-python/scipy-0.17.0[${PYTHON_USEDEP}]
+	dev-python/plotly[${PYTHON_USEDEP}]
+	>=dev-python/py2bit-0.2.0[${PYTHON_USEDEP}]
+	>=dev-python/pyBigWig-0.2.1[${PYTHON_USEDEP}]
+	>=sci-biology/pysam-0.14.0[${PYTHON_USEDEP}]
+	>=dev-python/matplotlib-3.5.0[${PYTHON_USEDEP}]
+"
+
+S="${WORKDIR}/deepTools-${PV}"
+PATCHES=( "${FILESDIR}"/${P}-add-build-backend.patch )
+
+distutils_enable_sphinx docs dev-python/sphinx-rtd-theme dev-python/sphinx-argparse
+distutils_enable_tests pytest

sci-biology/deeptools/files/deeptools-3.5.6-add-build-backend.patch

@@ -0,0 +1,12 @@
+diff --git a/pyproject.toml b/pyproject.toml
+index 2072ec1f52..9b28626680 100644
+--- a/pyproject.toml
++++ b/pyproject.toml
+@@ -2,6 +2,7 @@
+ requires = [
+     "setuptools"
+ ]
++build-backend = "setuptools.build_meta"
+
+ [project]
+ name = "deepTools"