scripts to reproduce the analysis and figures from Hacquard et al., 2015
if you use any of the following code, please cite:
Stephane Hacquard, Ruben Garrido-Oter, Antonio González Peña, Stijn Spaepen, Gail Ackermann, Sarah Lebeis, Alice C. McHardy, Jeffrey L. Dangl, Rob Knight, Ruth Ley Paul Schulze-Lefert. Microbiota and Host Nutrition: Structure, Diversification and Functions across Plant and Animal Kingdoms, Cell Host and Microbe, 2015
originally by Ruben Garrido-Oter
to reproduce the analysis, first download and extract the data from:
http://bioinfo.mpipz.mpg.de/download/chommeta_data.zip
and then run script.R