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minor style and wording update
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ahwagner committed Dec 16, 2024
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10 changes: 5 additions & 5 deletions docs/source/concepts/LocationAndReference/SequenceLocation.rst
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Expand Up @@ -55,10 +55,10 @@ The "Ref" Allele

In some variant representation formats (e.g. HGVS, VCF) sequence variants are described by both their "reference"
(ref) and "alternate" (alt) alleles. When representing an Allele with VRS v2, it is also possible to describe the
ref sequence (derived from the :ref:SequenceReference at the location) using the *sequence* property.
ref sequence (derived from the :ref:`SequenceReference` at the location) using the *sequence* property.

The *sequence* property is **for descriptive purposes only**, and not a substitute for the *sequenceReference*
property.
The ``sequence`` property is **for describing the sequence derived from the SequenceLocation**, and not a substitute
for the ``sequenceReference`` property that references the sequence on which the location is defined.

.. admonition:: New in v2

Expand Down Expand Up @@ -93,7 +93,7 @@ CisPhasedBlocks and the Inferred SequenceReference
##################################################

When a :ref:`SequenceReference` is provided in a :ref:`CisPhasedBlock`, it is defined that all member
:ref:`Allele` objects occur on that sequence. Consequently, the `SequenceLocation` object for each
:ref:`Allele` does not need to populate the `sequenceReference` property. There may be other contexts
:ref:`Allele` objects occur on that sequence. Consequently, the ``SequenceLocation`` object for each
:ref:`Allele` does not need to populate the ``sequenceReference`` property. There may be other contexts
where this optional property may be omitted, but when this is done there SHOULD be a means of inferring
the content of this property (as is explicitly described in :ref:`CisPhasedBlock`).

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