rePROBE

Overview

Revised probe assignment and updated probe-set annotation in microarrays

Installation

To install from GitHub:

# install.packages("devtools")
devtools::install_github("friederhadlich/rePROBE")

Usage

1. Prepare your microarray definition, genomic information and annotations using ARG_LIST <- prepare_data() to return a list of rePROBE arguments (ARG_LIST).
2. Perform the rePROBE - analysis using run(ARG_LIST), which generates an appropiate environment object for the use with R packages i.e. oligo or affy.
3. Show a summarizing report using function show_report(ARG_LIST).