This repository is the result of a master's thesis comparing
openly available toolboxes for positron emission tomography (PET) image reconstruction
in the context of functional PET (fPET) for neuroscience.
The directories NiftyPET and SIRF-STIR contain the code and setup
for reconstructions using the two toolboxes. For further details consult the
respective README files in the directories.
The image_evaluation directory contains a workflow to first normalize results
to MNI space and then compute image quality metrics per brain region.
It is executed by image_evaluation/run_eval.sh script and operates on
data inside the image_evaluation/data directory. For further information
please refer to the README file in the directory.
The plotting directory contains various scripts and utilities for plotting
the results.
The full thesis is available at TODO.