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Update README.md
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ethanbass authored Aug 30, 2024
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Expand Up @@ -135,7 +135,7 @@ remotes::install_github("https://github.com/bovee/entab/", subdir = "entab-r")
Thermo RAW files can be converted by calling the [ThermoRawFileParser](https://github.com/compomics/ThermoRawFileParser) on the command-line. To install the ThermoRawFileParser, follow the instructions [here](https://github.com/compomics/ThermoRawFileParser). If you are running Linux or Mac OS X, you will also need to install [mono](https://www.mono-project.com/download/stable/#download-lin), following the instructions provided at the link. In addition, when you use chromConverter to convert Thermo RAW files for the first time you will be asked to enter the path to the program.

##### **OpenChrom**
###### (**Note:** Support for the commmand line interface has been removed from OpenChrom (as of `version 1.5.0`). Older versions (e.g. `1.4.x`) should still work for now).
###### (**Note:** Support for the commmand line interface has been removed from OpenChrom (as of `version 1.5.0`). Older versions (e.g., `1.4.x`) should still work but are unfortunately no longer available from Lablicate).

[OpenChrom](https://lablicate.com/platform/openchrom) is open source chromatography software, containing a large number of file parsers, which can now be conveniently accessed directly from R. Strangely, configuring OpenChrom for use on the command-line deactivates the graphical user interface (GUI). Thus, it is recommended to make a separate copy of OpenChrom if you'd still like to access the GUI. To use the OpenChrom parsers, follow the steps detailed below:

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