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athena_environment.yaml
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name: athena
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=0_gnu
- athena_meta=1.3=py_1
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.1=py_0
- backports.shutil_get_terminal_size=1.0.0=py_3
- backports_abc=0.5=py_1
- bamm=1.7.3=py27h5caf2ec_6
- bedtools=2.29.2=hc088bd4_0
- biom-format=2.1.7=py27_0
- biopython=1.76=py27h516909a_0
- blasr=5.3.5=0
- blasr_libcpp=5.3.3=h707fff8_0
- blast=2.7.1=h4422958_6
- blosc=1.20.0=he1b5a44_0
- boost=1.67.0=py27h3e44d54_0
- boost-cpp=1.67.0=h3a22d5f_0
- bwa=0.7.17=hed695b0_7
- bx-python=0.8.9=py27h54ae540_2
- bzip2=1.0.8=h516909a_2
- c-ares=1.11.0=h470a237_1
- ca-certificates=2021.5.30=ha878542_0
- capnproto=0.6.1=hfc679d8_1
- certifi=2019.11.28=py27h8c360ce_1
- click=7.1.2=pyh9f0ad1d_0
- configparser=3.7.3=py27h8c360ce_2
- curl=7.71.1=he644dc0_4
- cycler=0.10.0=py_2
- daligner=1.0.20200322=h516909a_0
- dazz_db=1.0=0
- dbus=1.13.6=he372182_0
- decorator=4.4.2=py_0
- entrypoints=0.3=py27h8c360ce_1001
- enum34=1.1.10=py27h8c360ce_1
- expat=2.2.9=he1b5a44_2
- flye=2.3.1=py27_0
- fontconfig=2.13.1=he4413a7_1000
- freetype=2.10.2=he06d7ca_0
- funcsigs=1.0.2=py_3
- functools32=3.2.3.2=py_3
- future=0.18.2=py27h8c360ce_1
- futures=3.3.0=py27h8c360ce_1
- gettext=0.19.8.1=hc5be6a0_1002
- glib=2.65.0=h6f030ca_0
- gmp=6.1.2=hf484d3e_1000
- gnutls=3.5.19=h2a4e5f8_1
- groopm=0.3.4=py27_0
- gsl=1.16=0
- gst-plugins-base=1.14.5=h0935bb2_2
- gstreamer=1.14.5=h36ae1b5_2
- h5py=2.9.0=nompi_py27hf008753_1102
- hdf5=1.10.4=nompi_h3c11f04_1106
- hmmer=3.1b2=3
- htseq=0.11.2=py27h637b7d7_1
- htslib=1.9=ha228f0b_7
- icu=58.2=hf484d3e_1000
- idba_subasm=1.1.3a1=py27pl526hf484d3e_0
- ipykernel=4.10.0=py27_1
- ipyparallel=6.2.4=py27h8c360ce_0
- ipython=5.8.0=py27_1
- ipython-cluster-helper=0.6.4=pyh864c0ab_1
- ipython_genutils=0.2.0=py_1
- joblib=0.14.1=pyh9f0ad1d_0
- jpeg=9d=h516909a_0
- jupyter_client=5.3.4=py27_1
- jupyter_core=4.6.3=py27h8c360ce_1
- k8=0.2.5=he513fc3_0
- kiwisolver=1.1.0=py27h9e3301b_1
- krb5=1.17.1=hfafb76e_2
- last=1060=h8b12597_0
- ld_impl_linux-64=2.34=h53a641e_7
- libblas=3.8.0=17_openblas
- libcblas=3.8.0=17_openblas
- libcurl=7.71.1=hcdd3856_4
- libdeflate=1.0=h14c3975_1
- libedit=3.1.20191231=h46ee950_1
- libev=4.33=h516909a_0
- libffi=3.2.1=he1b5a44_1007
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=9.2.0=h24d8f2e_2
- libgfortran-ng=7.5.0=hdf63c60_6
- libgomp=9.2.0=h24d8f2e_2
- libiconv=1.15=h516909a_1006
- liblapack=3.8.0=17_openblas
- libnghttp2=1.41.0=hab1572f_1
- libopenblas=0.3.10=pthreads_hb3c22a3_4
- libpng=1.6.37=hed695b0_1
- libsodium=1.0.17=h516909a_0
- libssh2=1.9.0=hab1572f_5
- libstdcxx-ng=9.2.0=hdf63c60_2
- libtiff=4.1.0=hc7e4089_6
- libuuid=2.32.1=h14c3975_1000
- libwebp-base=1.1.0=h516909a_3
- libxcb=1.13=h14c3975_1002
- libxml2=2.9.9=h13577e0_2
- linecache2=1.0.0=py_1
- llvm-openmp=8.0.1=hc9558a2_0
- lz4-c=1.9.2=he1b5a44_1
- lzo=2.10=h516909a_1000
- magpurify=1.0=2
- mash=2.0=gsl1.16_1
- matplotlib=2.2.3=py27hb69df0a_0
- megahit=1.2.9=h8b12597_0
- minimap2=2.17=hed695b0_3
- mock=3.0.5=py27h8c360ce_1
- mummer4=4.0.0rc1=pl526he1b5a44_0
- nanosim=2.1.0=pyh24bf2e0_0
- ncurses=6.1=hf484d3e_1002
- netifaces=0.10.4=py27_1
- nettle=3.3=0
- numexpr=2.6.9=py27h637b7d7_1000
- numpy=1.11.3=py27he5ce36f_1207
- olefile=0.46=py_0
- openmp=8.0.1=0
- openssl=1.1.1h=h516909a_0
- pandas=0.23.4=py27h637b7d7_1000
- parallel=20200722=0
- pathlib2=2.3.5=py27h8c360ce_1
- pbbam=0.23.0=h88345a9_0
- pbdagcon=0.1=boost1.60_0
- pbsim=1.0.3=h2d50403_2
- pcre=8.44=he1b5a44_0
- perl=5.26.2=h516909a_1006
- perl-archive-tar=2.32=pl526_0
- perl-carp=1.38=pl526_3
- perl-compress-raw-bzip2=2.087=pl526he1b5a44_0
- perl-compress-raw-zlib=2.087=pl526hc9558a2_0
- perl-exporter=5.72=pl526_1
- perl-exporter-tiny=1.002001=pl526_0
- perl-extutils-makemaker=7.36=pl526_1
- perl-io-compress=2.087=pl526he1b5a44_0
- perl-io-zlib=1.10=pl526_2
- perl-list-moreutils=0.428=pl526_1
- perl-list-moreutils-xs=0.428=pl526_0
- perl-pathtools=3.75=pl526h14c3975_1
- perl-scalar-list-utils=1.52=pl526h516909a_0
- perl-xsloader=0.24=pl526_0
- pexpect=4.8.0=pyh9f0ad1d_2
- pickleshare=0.7.5=py27h8c360ce_1001
- pillow=6.2.1=py27hd70f55b_1
- pip=20.1.1=pyh9f0ad1d_0
- prodigal=2.6.3=h516909a_2
- prompt_toolkit=1.0.15=py_1
- pthread-stubs=0.4=h14c3975_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pybedtools=0.8.1=py27h4bd9754_2
- pygments=2.5.2=py_0
- pyparsing=2.4.7=pyh9f0ad1d_0
- pyqi=0.3.2=py27_1
- pyqt=5.9.2=py27hcca6a23_4
- pysam=0.15.3=py27hda2845c_1
- pytables=3.5.1=py27h442f067_1
- python=2.7.15=h5a48372_1011_cpython
- python-dateutil=2.8.1=py_0
- python-lzo=1.12=py27h42e1302_1001
- python_abi=2.7=1_cp27mu
- pytz=2020.1=pyh9f0ad1d_0
- pyzmq=19.0.0=py27h76efe43_1
- qt=5.9.7=h52cfd70_2
- readline=8.0=h46ee950_1
- samtools=1.9=h10a08f8_12
- scandir=1.10.0=py27hdf8410d_1
- scikit-learn=0.20.3=py27ha8026db_1
- scipy=1.2.1=py27h09a28d5_1
- setuptools=44.0.0=py27_0
- simplegeneric=0.8.1=py_1
- singledispatch=3.4.0.3=py27_1000
- sip=4.19.8=py27hf484d3e_1000
- six=1.15.0=pyh9f0ad1d_0
- spades=3.13.1=h2d02072_2
- sqlite=3.32.3=hcee41ef_1
- subprocess32=3.5.4=py27h516909a_0
- tk=8.6.10=hed695b0_0
- tornado=5.1.1=py27h14c3975_1000
- traceback2=1.4.0=py27_0
- traitlets=4.3.3=py27h8c360ce_1
- unittest2=1.1.0=py_0
- wcwidth=0.2.5=pyh9f0ad1d_2
- wgsim=1.0=ha92aebf_2
- wheel=0.34.2=py_1
- xorg-libxau=1.0.9=h14c3975_0
- xorg-libxdmcp=1.1.3=h516909a_0
- xz=5.2.5=h516909a_1
- zeromq=4.3.2=he1b5a44_2
- zlib=1.2.11=h516909a_1006
- zstd=1.4.5=h6597ccf_1
- pip:
- atomicwrites==1.4.0
- attrs==21.2.0
- autopep8==1.5.7
- bg==1.10
- blist==1.3.6
- camsa==1.3
- configargparse==1.5.1
- contextlib2==0.6.0.post1
- coverage==5.5
- cython==0.22
- enum-compat==0.0.3
- ete2==2.3.10
- ete3==3.1.2
- importlib-metadata==2.1.1
- jinja2==2.11.3
- markupsafe==1.1.1
- marshmallow==2.21.0
- more-itertools==5.0.0
- networkx==2.2
- nose==1.3.7
- packaging==20.9
- pluggy==0.13.1
- py==1.10.0
- pycodestyle==2.7.0
- pytest==4.6.11
- toml==0.10.2
- tsne==0.1.1
- zipp==1.2.0
prefix: /home/comp/zmzhang/software/anaconda3/envs/athena