Add scenario modelling + param uncertainty vignette, fixes #183

epiverse-trace · Mar 14, 2024 · c0315e9 · c0315e9
1 parent afedd15
commit c0315e9
Show file tree

Hide file tree

Showing 5 changed files with 477 additions and 241 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -53,7 +53,8 @@ Suggests:
     spelling,
     testthat (>= 3.0.0),
     tibble,
-    tidyr
+    tidyr,
+    withr
 LinkingTo: 
     BH,
     Rcpp,

diff --git a/_pkgdown.yml b/_pkgdown.yml
@@ -19,7 +19,7 @@ articles:
 - title: Other modelling vignettes
   navbar: Other modelling vignettes
   contents:
-  - modelling_parameter_uncertainty
+  - modelling_scenarios
   - finalsize_comparison
 - title: Guides to library models
   navbar: Guides to library models

diff --git a/inst/WORDLIST b/inst/WORDLIST
@@ -115,8 +115,8 @@ packagename
 pak
 param
 pkg
-rmarkdown
 recyclability
+rmarkdown
 rollout
 socialmixr
 stochasticity
@@ -130,6 +130,7 @@ tidyr
 timepoint
 timesteps
 uBLAS
+unnesting
 vacamole
 withr
 www

diff --git a/vignettes/modelling_parameter_uncertainty.Rmd b/vignettes/modelling_parameter_uncertainty.Rmd
-Original file line number
+Diff line change
@@ Expand Up / @@ -53,7 +53,8 @@ Suggests: @@
         spelling,
         testthat (>= 3.0.0),
         tibble,
-        tidyr
+        tidyr,
+        withr
     LinkingTo:
         BH,
         Rcpp,
@@ Expand Down @@