BSWH Integration- (Biospecimen)

[sonyekere]

Biospecimen repository will require an update for site Baylor Scott and White Health (BSWH) integration.

[sonyekere]

Thank you @erincschwartz for the below requirements.

**Baylor Scott and White Health needs collection and shipping locations added to the Biospecimen Dashboard. This a research site.

Need Concept IDs under:
BioSpm_Location_v1r0 (Collection Location, 951355211)
BioShip_LocalID_v1r0 (Location ID, site specific, 560975149)

The following need to be added to the dashboard drop downs
Collection Location: BSW Health and Wellness Center
Shipping Location: BSW Health and Wellness Center

Please add to the csv files following rules for other research locations.

@wyattks please add to BSI.**

[Gbarra9]

Notes from BSWH Integration (Code Changes)

• shared.js

  • siteFullNames
  • siteSpecificLocation
  • locationConceptIDToLocationMap
  • conceptIdToSiteSpecificLocation (specific locations, not site)
  • siteSpecificLocationToConceptId (specific locations, not site)
  • NameToKeyObj (This appears to not be referenced anywhere)
  • keyToNameAbbreviationObj
  • keyToNameObj
  • keyToNameCSVObj
  • keyToLocationObj (specific locations, not site)
  • siteLocations

• fieldMapping.js:

  • collectionLocationMapping (specific locations, not site)
  • nameToKeyObj (specific locations, not site)

• tubeValidation.js

  • siteSpecificTubeRequirements

• welcome.js
  researchOnlySiteArray

[brotzmanmj]

Update: Here are the sites BSWH would like to start with for research collection and shipping locations.

The one we listed above for BSW Health and Wellness Center should be listed instead as:
BCC- HWC
In addition they would like these four locations for collection and shipping:
BCC- All Saints (FW)
BCC- Plano
BCC- Worth St
BCC- Irving

Addresses for these are in email from Brittany if needed for the shipping manifests. @wyattks if you can add there here, that would be great, thanks.

[wyattks]

BCC- All Saints (FW)- 1307 8th Ave Ste 305, Fort Worth, TX, 76104
BCC- Plano- 801 E Plano Pkwy Ste 160, Plano, TX, 75074
BCC- Worth St.- 4001 Worth St , Dallas, TX, 75246
BCC- Irving- 2021 N MacArthur Blvd Ste 210, Irving, TX, 75061
BCC- HWC - 4500 Spring Ave , Dallas, TX, 75210

[erincschwartz]

BSWH would also like the following added as a collection and shipping location:

NTX Biorepository- 3410 Worth St. Suite 530, Dallas, TX 75246

[Gbarra9]

Here are the requested collection and shipping locations so far:

BCC- All Saints (FW)- 1307 8th Ave Ste 305, Fort Worth, TX, 76104
BCC- Plano- 801 E Plano Pkwy Ste 160, Plano, TX, 75074
BCC- Worth St.- 4001 Worth St , Dallas, TX, 75246
BCC- Irving- 2021 N MacArthur Blvd Ste 210, Irving, TX, 75061
BCC- HWC - 4500 Spring Ave , Dallas, TX, 75210
NTX Biorepository- 3410 Worth St. Suite 530, Dallas, TX 75246

I have a question about the manifest portion. What will the naming be for the "Study Team"? What will the email be for the different BSWH site location, will they be the same or different?

Below is a manifest example:

[erincschwartz]

@Gbarra9 Please use the following information for the manifest
Study Team: BSWH Connect Study Team
Email: [email protected] The email will be the same for all BSWH site locations.

[Gbarra9]

@Gbarra9 Please use the following information for the manifest
Study Team: BSWH Connect Study Team
Email: [email protected] The email will be the same for all BSWH site locations.

Will do, thanks @erincschwartz

[erincschwartz]

@Gbarra9 can you check to ensure BSWH only has access to Research Collection in the Dashboard, not to Clinical Collection at the start

[Gbarra9]

Hi @erincschwartz, the code I have at the moment has BSWH with only research dashboard access.

[erincschwartz]

@Gbarra9 I just met with BSWH to run through the Biospecimen Dashboard, there are edits needed for the Collection and Shipping Location lists.

They have requested the following updates to the Collection Location List:
Location BCC-HWC, BC ---update name to: BCC-HWC
Location BCC-All Saints (FW)---update to FW All Saints
Add new location: BCC- Fort Worth

The Shipping Locations are not appearing in Dev, so we could not move through a test shipment. This is what is showing up:

BSWH would like all of the Collection Locations listed as Shipping Locations (with edited names and including the new collection location requested above)

They would also like these lists to appear in alphabetical order.

Please let me know when these changes are ready for Dev testing.

[brotzmanmj]

@erincschwartz Let's discuss the Fort Worth/All Saints requested changes

[brotzmanmj]

@Gbarra9 please hold on this request until we get clarification from BSWH.

[erincschwartz]

@Gbarra9 After communicating with BSWH, we do not need to add BCC- Fort Worth as a new collection and shipping location (will do this in a later release).

Please do work to update the name of BCC-HWC, BC location, removing the BC at the end. This location name should just be BCC-HWC

And, the shipping locations do need to be added, as mentioned above.

[Gbarra9]

@Gbarra9 After communicating with BSWH, we do not need to add BCC- Fort Worth as a new collection and shipping location (will do this in a later release).

Please do work to update the name of BCC-HWC, BC location, removing the BC at the end. This location name should just be BCC-HWC

And, the shipping locations do need to be added, as mentioned above.

@erincschwartz Thanks, I'll start working on this.

[erincschwartz]

Adding @rebexxxxxx to this issue since the Collection and Shipping location names will need to be updated in the Data Dictionary when complete.

[Gbarra9]

Pull Request was created to address comment issues and suggestions:

• BSWH Integration- (Biospecimen)  #882 (comment)
• BSWH Integration- (Biospecimen)  #882 (comment)

Pull Request (pending team review)

• BSWH - rename locations and display location dropdowns alphabetically NCI-C4CP/biospecimen#710

[Gbarra9]

@erincschwartz The updates are in dev.

[erincschwartz]

@Gbarra9 Shipping locations look good and worked for Jan to ship a collection. I received the collection in the Dashboard and Shipping Manifest and receipt csv file appeared as expected.

Can you do a check of the backend data and make sure the derived variables look right? Connect ID: 6391301439 Collection ID: CXA669944

[Gbarra9]

@Gbarra9 Shipping locations look good and worked for Jan to ship a collection. I received the collection in the Dashboard and Shipping Manifest and receipt csv file appeared as expected.

Can you do a check of the backend data and make sure the derived variables look right? Connect ID: 6391301439 Collection ID: CXA669944

The data looks as expected on the backend. I noted the values and highlighted green for missing keys.
https://app.box.com/s/shrt7jb9o9powv768u04rj02eqa3fu9n

[erincschwartz]

@Gbarra9 I reviewed the backend data document linked above, all derived variables look good. Please note, in the document it states: <265193023>SrvBLM_ResSrvCompl_v1r0 (Blood/urine/mouthwash combined research survey status) - Started (615768760); Firestore and BQ show the status for this variable as 'not started' (which is the expected status)

[Gbarra9]

@erincschwartz I'm going to edit the document as 'not started'

[wyattks]

Stage testing is complete. Ready for Prod