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remove missing population data #127

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merged 1 commit into from
Sep 11, 2024
Merged

remove missing population data #127

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1 change: 1 addition & 0 deletions NEWS.md
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Original file line number Diff line number Diff line change
@@ -1,6 +1,7 @@
# socialmixr (development version)

* The speed of loading surveys has been increased.
* An error has been fixed causing NA contact matrices if any 5-year age band in the population data was missing.

# socialmixr 0.3.2

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2 changes: 2 additions & 0 deletions R/contact_matrix.r
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Expand Up @@ -430,6 +430,8 @@ contact_matrix <- function(survey, countries = NULL, survey.pop, age.limits, fil

# add upper.age.limit after sorting the survey.pop ages (and add maximum age > given ages)
survey.pop <- survey.pop[order(lower.age.limit), ]
# if any lower age limits are missing remove them
survey.pop <- survey.pop[!is.na(population)]
survey.pop$upper.age.limit <- unlist(c(
survey.pop[-1, "lower.age.limit"],
1 + max(
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