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527 Implement "Enhanced Stereochemistry" window #558

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Jun 7, 2021
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27 changes: 10 additions & 17 deletions packages/ketcher-react/src/script/ui/data/convert/structconv.js
Original file line number Diff line number Diff line change
Expand Up @@ -14,15 +14,13 @@
* limitations under the License.
***************************************************************************/

import { capitalize } from 'lodash/fp'
import { AtomList, Bond, Elements, StereoLabel } from 'ketcher-core'

import { Bond, AtomList, StereoLabel, Elements } from 'ketcher-core'
import { sdataSchema } from '../schema/sdata-schema'
import { atom as atomSchema } from '../schema/struct-schema'
import {
getPredefinedStereoLabels,
predefinedStereoGroups
} from '../../dialog/toolbox/enhancedStereo'
import { capitalize } from 'lodash/fp'
import { sdataSchema } from '../schema/sdata-schema'

const DefaultStereoGroupNumber = 1

export function fromElement(selem) {
if (selem.label === 'R#') {
Expand Down Expand Up @@ -126,24 +124,19 @@ export function fromStereoLabel(stereoLabel) {
if (stereoLabel === null) return { type: null }
const type = stereoLabel.match(/\D+/g)[0]
const number = +stereoLabel.replace(type, '')
const defaultOrNumber = predefinedStereoGroups[StereoLabel.Or].max + 1
const defaultAndNumber = predefinedStereoGroups[StereoLabel.And].max + 1

if (
type === StereoLabel.Abs ||
getPredefinedStereoLabels(type).includes(stereoLabel)
) {
if (type === StereoLabel.Abs) {
return {
type: stereoLabel,
orNumber: defaultOrNumber,
andNumber: defaultAndNumber
orNumber: DefaultStereoGroupNumber,
andNumber: DefaultStereoGroupNumber
}
}

if (type === StereoLabel.And) {
return {
type: type,
orNumber: defaultOrNumber,
orNumber: DefaultStereoGroupNumber,
andNumber: number
}
}
Expand All @@ -152,7 +145,7 @@ export function fromStereoLabel(stereoLabel) {
return {
type: type,
orNumber: number,
andNumber: defaultOrNumber
andNumber: DefaultStereoGroupNumber
}
}
}
Expand Down
245 changes: 113 additions & 132 deletions packages/ketcher-react/src/script/ui/dialog/toolbox/enhancedStereo.tsx
Original file line number Diff line number Diff line change
@@ -1,67 +1,10 @@
import React from 'react'
import { connect } from 'react-redux'

import { Dialog } from '../../views/components'
import Form, { Field } from '../../component/form/form'
import { StereoLabel } from 'ketcher-core'

export const predefinedStereoGroups = {
[StereoLabel.And]: {
min: 1,
max: 2
},
[StereoLabel.Or]: {
min: 1,
max: 2
}
} as const

export function getPredefinedStereoLabels(stereoLabel: StereoLabel): string[] {
const min = predefinedStereoGroups[stereoLabel].min
const max = predefinedStereoGroups[stereoLabel].max
import { StereoLabel, Struct } from 'ketcher-core'

return new Array(max - min + 1)
.fill(null)
.map((_, index) => stereoLabel + (min + index))
}

const enhancedStereoSchema = {
title: 'Enhanced Stereo',
type: 'object',
properties: {
type: {
title: 'Stereo Label',
enum: [
StereoLabel.Abs,
...getPredefinedStereoLabels(StereoLabel.And),
StereoLabel.And,
...getPredefinedStereoLabels(StereoLabel.Or),
StereoLabel.Or
],
enumNames: [
'ABS',
...getPredefinedStereoLabels(StereoLabel.And).map(stereoLabel =>
stereoLabel.replace(StereoLabel.And, 'AND')
),
'AND...',
...getPredefinedStereoLabels(StereoLabel.Or).map(stereoLabel =>
stereoLabel.toUpperCase()
),
'OR...'
]
},
andNumber: {
type: 'integer',
minimum: 1,
invalidMessage: 'Only positive integer'
},
orNumber: {
type: 'integer',
minimum: 1,
invalidMessage: 'Only positive integer'
}
}
}
import { Dialog } from '../../views/components'
import React from 'react'
import { connect } from 'react-redux'
import { range } from 'lodash'

interface EnhancedStereoResult {
andNumber: number
Expand All @@ -79,6 +22,7 @@ interface EnhancedStereoProps {
className: string
init: EnhancedStereoResult & { init?: true }
formState: EnhancedStereoFormState
struct: Struct
}

interface EnhancedStereoCallProps {
Expand All @@ -89,24 +33,31 @@ interface EnhancedStereoCallProps {
type Props = EnhancedStereoProps & EnhancedStereoCallProps

const EnhancedStereo: React.FC<Props> = props => {
const { formState, init, ...rest } = props
const { struct, formState, init, ...rest } = props
const { result, valid } = formState

const handleChange = (
stereoLabel: StereoLabel,
newState: EnhancedStereoResult
): EnhancedStereoResult => {
const defaultOrNumber = predefinedStereoGroups[StereoLabel.Or].max + 1
const defaultAndNumber = predefinedStereoGroups[StereoLabel.And].max + 1
const stereoLabels: Array<string> = findStereLabels(
struct,
Array.from(struct.atoms.keys())
)

if (andNumberDisabled(stereoLabel)) {
newState.andNumber = defaultAndNumber
}
if (orNumberDisabled(stereoLabel)) {
newState.orNumber = defaultOrNumber
const maxAnd: number = maxOfAnds(stereoLabels)
const maxOr: number = maxOfOrs(stereoLabels)

const enhancedStereoSchema = {
title: 'Enhanced Stereo',
type: 'object',
properties: {
type: {
type: 'string'
},
andNumber: {
type: 'integer'
},
orNumber: {
type: 'integer'
}
}

return newState
}

return (
Expand All @@ -116,74 +67,104 @@ const EnhancedStereo: React.FC<Props> = props => {
params={rest}
result={() => result}
valid={() => valid}
buttons={['OK', 'Close']}>
buttons={['Cancel', 'OK']}>
<Form schema={enhancedStereoSchema} init={init} {...formState}>
<Field
name="type"
component={FieldSet}
labelPos={false}
onChange={handleChange}
/>
</Form>
</Dialog>
)
}

interface FieldSetProps {
name: string
schema: any
value: StereoLabel
onChange: (value: string) => void
type?: string
}

const FieldSet: React.FC<FieldSetProps> = props => {
const { schema, value, onChange, type = 'radio', ...rest } = props

return (
<fieldset>
{schema.enum.map((val, index) => (
<li key={schema.enumNames[index]} className="stereo-label-item">
<label className="stereo-label-name">
<input
type={type}
checked={val === value}
value={val}
onChange={() => onChange(val)}
{...rest}
<fieldset>
<label className="stereo-label-item">
<Field
name="type"
labelPos={false}
type="radio"
value={StereoLabel.Abs}
checked={result.type === StereoLabel.Abs}
/>
{schema.enumNames[index]}
ABS
</label>
{val === StereoLabel.And && (
{maxAnd !== 0 && (
<label className="stereo-label-item">
<Field
name="type"
labelPos={false}
type="radio"
value={StereoLabel.And}
checked={result.type === StereoLabel.And}
/>
Add to AND
<Field
name="andNumber"
schema={range(1, maxAnd + 1)}
type="text"
className="label-group-select"
/>
Group
</label>
)}
{maxOr !== 0 && (
<label className="stereo-label-item">
<Field
name="type"
labelPos={false}
type="radio"
value={StereoLabel.Or}
checked={result.type === StereoLabel.Or}
/>
Add to OR
<Field
name="orNumber"
schema={range(1, maxOr + 1)}
type="text"
className="label-group-select"
/>
Group
</label>
)}
<label className="stereo-label-item">
<Field
name="andNumber"
type="text"
className="label-group-value"
disabled={andNumberDisabled(value)}
name="type"
labelPos={false}
type="radio"
value={`&${maxOr + 1}`}
/>
)}
{val === StereoLabel.Or && (
Create new AND Group
</label>
<label className="stereo-label-item">
<Field
name="orNumber"
type="text"
className="label-group-value"
disabled={orNumberDisabled(value)}
name="type"
labelPos={false}
type="radio"
value={`or${maxOr + 1}`}
/>
)}
</li>
))}
</fieldset>
Create new OR Group
</label>
</fieldset>
</Form>
</Dialog>
)
}

// TODO: Move the function below to Struct class
function findStereLabels(struct, aids): Array<string> {
const stereoIds = aids.filter(
aid => struct.atoms.get(aid).stereoLabel !== null
)
return stereoIds.map(aid => struct.atoms.get(aid).stereoLabel)
}

function andNumberDisabled(stereoLabel: StereoLabel): boolean {
return !stereoLabel || stereoLabel !== StereoLabel.And || stereoLabel === null
function maxOfAnds(stereLabels): number {
const numbers = stereLabels.map(label => {
return label.match(/&/) ? +label.match(/\d+/)?.join() : 0
})
return Math.max(...numbers)
}

function orNumberDisabled(stereoLabel: StereoLabel): boolean {
return !stereoLabel || stereoLabel !== StereoLabel.Or || stereoLabel === null
function maxOfOrs(stereLabels): number {
const numbers = stereLabels.map(label => {
return label.match(/or/) ? +label.match(/\d+/)?.join() : 0
})
return Math.max(...numbers)
}

export default connect(store => ({
formState: store.modal.form || { result: {}, valid: false }
export default connect(state => ({
formState: state.modal.form || { result: {}, valid: false },
struct: state.editor.struct()
}))(EnhancedStereo)
14 changes: 12 additions & 2 deletions packages/ketcher-react/src/style/dialogs.less
Original file line number Diff line number Diff line change
Expand Up @@ -175,21 +175,31 @@
}

.enhanced-stereo {
width: 330px;

.stereo-label-item {
display: flex;
align-items: center;
min-height: 2.4em;
margin: 2px;
}

.stereo-label-name {
display: flex;
align-items: center;
min-width: 60px;
margin-right: 15px;
margin-right: 5px;
}

.label-group-value {
width: 48px;
width: 22px;
margin: 0;
margin-right: 5px;
}

.label-group-select {
margin-right: 5px;
margin-left: 5px;
}
}

Expand Down