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Macro: System should allow '*' symbol at the beginning of peptide sequence #4359

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AlexeyGirin opened this issue Mar 28, 2024 · 1 comment
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FASTA Bucket: FASTA related issues Macromolecules Priority: Low

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@AlexeyGirin
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AlexeyGirin commented Mar 28, 2024

Steps to Reproduce

  1. Switch to Macromolecules mode
  2. Load by Paste from Clipboard as FASTA - Peptide the following:
>That should be allowed
*AAAA

image

Actual behavior
System throws an error: Convert error! Given string could not be loaded as (query or plain) molecule or reaction, see the error messages
image

Expected behavior
System loads peptide without errors
image

As per requirement description (epam/Indigo#1755 (comment)):

"*" means the end of the peptide sequence
If " * " occurred between two letters then it should be recognized as the break in peptide chain (no bond should be created between monomers separated with the "*").
Confirmed by @olganaz

Environment details:
Ketcher Version 2.20.0-rc.2 Build at 2024-03-27; 08:30:51
Indigo Toolkit Version 1.19.0-rc.2.0-g6c0e3fecf-x86_64-linux-gnu-11.2.1
Win10
Chrome Version 122.0.6261.129 (Official Build) (64-bit)

Related issues:

@AlexeyGirin
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Moved to Refined Backlog since not fixed over 1 release

@AlexeyGirin AlexeyGirin removed the bug label Jan 16, 2025
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Labels
FASTA Bucket: FASTA related issues Macromolecules Priority: Low
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