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FASTA: Load FASTA or Sequence file that contains few monomers causes their overlaping on the canvas #4355

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NadezhdaPeskun opened this issue Mar 27, 2024 · 5 comments
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FASTA: Load FASTA or Sequence file that contains few monomers causes their overlaping on the canvas #4355

NadezhdaPeskun opened this issue Mar 27, 2024 · 5 comments
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@baranovdv
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external Issue depends on external services such as Indigo service FASTA Bucket: FASTA related issues Macromolecules Priority: High
Milestone
Ketcher 2.21.0-rc.2

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@NadezhdaPeskun
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NadezhdaPeskun commented Mar 27, 2024 •
edited by baranovdv
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Steps to Reproduce

  1. Macromolecules mode
  2. Open following FASTA file as RNA: Load FASTA or Sequence file that contains few monomers causes their overlaping on the canvas.zip

Actual behavior
System put on the canvas sequence elements that overlaps each other
image

Expected behavior
All nucleosides are distributed on the canvas without overlaping
image

Related

Environment details:
Version 2.20.0-rc.2
Build at 2024-03-27; 08:30:51
Indigo Toolkit
Version 1.19.0-rc.2.0-g6c0e3fecf-x86_64-linux-gnu-11.2.1

Win10
Chrome Version 122.0.6261.129 (Official Build) (64-bit)
@NadezhdaPeskun NadezhdaPeskun added this to the Waiting for triage milestone Mar 27, 2024
@NadezhdaPeskun NadezhdaPeskun added the FASTA Bucket: FASTA related issues label Mar 27, 2024
@NadezhdaPeskun NadezhdaPeskun mentioned this issue Mar 27, 2024
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@AlexeyGirin AlexeyGirin changed the title FASTA: Overlapping on the Canvas while open several RNA/DNA from FASTA or Sequence file FASTA: Load FASTA or Sequence file that contains few monomers causes their overlaping on the canvas Mar 27, 2024
@NataliaLoginova NataliaLoginova added the external Issue depends on external services such as Indigo service label Apr 12, 2024
@baranovdv baranovdv mentioned this issue Apr 14, 2024
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@NataliaLoginova
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The issue has to be fixed in Indigo.
The issue was created Indigo incorrectly calculates RNA coordinates with data from FASTA/Sequence file

@AlexeyGirin AlexeyGirin mentioned this issue Apr 19, 2024
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@baranovdv
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Issue fixed in Indigo by this PR:
epam/Indigo#1924

@AlexeyGirin
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Moved to Indigo - epam/Indigo#1910

@AlexeyGirin AlexeyGirin closed this as not planned Won't fix, can't repro, duplicate, stale May 7, 2024
@NadezhdaPeskun
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Verified as fixed on RC
Version 2.21.0-rc.2

Indigo Toolkit
Version 1.20.0-rc.2.0-g111a89f35-wasm32-wasm-clang-12.0.0

@NadezhdaPeskun NadezhdaPeskun reopened this May 7, 2024
@NadezhdaPeskun
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Version 2.21.0-rc.2
Build at 2024-05-07; 12:32:44
Feedback
EPAM Life Sciences

Indigo Toolkit
Version 1.20.0-rc.2.0-g111a89f35-wasm32-wasm-clang-12.0.0

@AlexeyGirin AlexeyGirin marked this as a duplicate of #4490 Feb 10, 2025
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@baranovdv baranovdv

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external Issue depends on external services such as Indigo service FASTA Bucket: FASTA related issues Macromolecules Priority: High
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Ketcher 2.21.0-rc.2
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@NataliaLoginova @rrodionov91 @AlexeyGirin @burcinkarimov @baranovdv @NadezhdaPeskun