#1567 System can't copy atom with custom query feature to clipboard
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GitHub Actions / ubuntu-x86_64-python_test_report
failed
Jan 22, 2024 in 0s
258 tests run, 255 passed, 0 skipped, 3 failed.
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Check failure on line 1 in api/c/tests/unit/tests/basic.cpp
github-actions / ubuntu-x86_64-python_test_report
basic.savers
[ERROR]
Raw output
Error:
Traceback (most recent call last):
File "/home/runner/work/Indigo/Indigo/api/tests/integration/tests/basic/savers.py", line 156, in testSaveLoad
err = compare_func(orig_obj, m)
File "/home/runner/work/Indigo/Indigo/api/tests/integration/tests/basic/savers.py", line 224, in compareQuery
m2_reloaded = indigo.loadQueryMolecule(m2.rawData())
File "/home/runner/.local/lib/python3.10/site-packages/indigo/indigo/indigo.py", line 445, in loadQueryMolecule
IndigoLib.checkResult(
File "/home/runner/.local/lib/python3.10/site-packages/indigo/indigo/indigo_lib.py", line 1015, in checkResult
raise exception_class(IndigoLib.lib.indigoGetLastError())
indigo.indigo.indigo_exception.IndigoException: SMILES loader: invalid character within atom description: '['
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/runner/work/Indigo/Indigo/api/tests/integration/test.py", line 368, in run_test_module
runpy.run_path(module_filename, run_name="__main__")
File "/usr/lib/python3.10/runpy.py", line 289, in run_path
return _run_module_code(code, init_globals, run_name,
File "/usr/lib/python3.10/runpy.py", line 96, in _run_module_code
_run_code(code, mod_globals, init_globals,
File "/usr/lib/python3.10/runpy.py", line 86, in _run_code
exec(code, run_globals)
File "/home/runner/work/Indigo/Indigo/api/tests/integration/tests/basic/savers.py", line 311, in <module>
testSaveLoad(
File "/home/runner/work/Indigo/Indigo/api/tests/integration/tests/basic/savers.py", line 172, in testSaveLoad
print(orig_obj.cml())
File "/home/runner/.local/lib/python3.10/site-packages/indigo/indigo/indigo_object.py", line 294, in cml
return IndigoLib.checkResultString(self._lib().indigoCml(self.id))
File "/home/runner/.local/lib/python3.10/site-packages/indigo/indigo/indigo_lib.py", line 1040, in checkResultString
return IndigoLib.checkResultPtr(result, exception_class).decode()
File "/home/runner/.local/lib/python3.10/site-packages/indigo/indigo/indigo_lib.py", line 1033, in checkResultPtr
raise exception_class(IndigoLib.lib.indigoGetLastError())
indigo.indigo.indigo_exception.IndigoException: CML saver: internal error: atom element was not set
Check failure on line 1 in api/c/tests/unit/tests/formats.cpp
github-actions / ubuntu-x86_64-python_test_report
formats.custom_query
[FAILED]
Raw output
Diff:
- [#6]1-[#6]=[#6]-[#6]=[#6]-[B;r;3;s&2,X3]=1 OK. Expected string found.
+ [#6]1-[#6]=[#6]-[#6]=[#6]-[B;r;3;s&2,X3]=1 FAILED. Expected string not found.
Check failure on line 1 in api/c/tests/unit/tests/formats.cpp
github-actions / ubuntu-x86_64-python_test_report
formats.smarts
[ERROR]
Raw output
Error:
Traceback (most recent call last):
File "/home/runner/work/Indigo/Indigo/api/tests/integration/test.py", line 368, in run_test_module
runpy.run_path(module_filename, run_name="__main__")
File "/usr/lib/python3.10/runpy.py", line 289, in run_path
return _run_module_code(code, init_globals, run_name,
File "/usr/lib/python3.10/runpy.py", line 96, in _run_module_code
_run_code(code, mod_globals, init_globals,
File "/usr/lib/python3.10/runpy.py", line 86, in _run_code
exec(code, run_globals)
File "/home/runner/work/Indigo/Indigo/api/tests/integration/tests/formats/smarts.py", line 251, in <module>
test_smarts_load_save_through_ket(
File "/home/runner/work/Indigo/Indigo/api/tests/integration/tests/formats/smarts.py", line 35, in test_smarts_load_save_through_ket
json1 = m1.json()
File "/home/runner/.local/lib/python3.10/site-packages/indigo/indigo/indigo_object.py", line 351, in json
return IndigoLib.checkResultString(self._lib().indigoJson(self.id))
File "/home/runner/.local/lib/python3.10/site-packages/indigo/indigo/indigo_lib.py", line 1040, in checkResultString
return IndigoLib.checkResultPtr(result, exception_class).decode()
File "/home/runner/.local/lib/python3.10/site-packages/indigo/indigo/indigo_lib.py", line 1033, in checkResultPtr
raise exception_class(IndigoLib.lib.indigoGetLastError())
indigo.indigo.indigo_exception.IndigoException: molecule json saver: Wrong chirality value 258
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