Actions - slim updated

enanomapper · May 17, 2024 · 0edd099 · 0edd099
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diff --git a/external-dev/aopo-slim.owl b/external-dev/aopo-slim.owl
@@ -44,7 +44,7 @@
         <terms:license rdf:resource="https://hpo.jax.org/app/license"/>
         <pav:importedFrom>https://raw.githubusercontent.com/jmillanacosta/aop-ontology/patch-1/aopo.owl</pav:importedFrom>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2024-05-06 12:16:37</oboInOwl:date>
+        <oboInOwl:date>2024-05-17 11:19:21</oboInOwl:date>
         <oboInOwl:date>27:04:2024 20:53</oboInOwl:date>
         <oboInOwl:default-namespace>chebi_ontology</oboInOwl:default-namespace>
         <oboInOwl:default-namespace>human_phenotype</oboInOwl:default-namespace>

diff --git a/external-dev/bao-slim.owl b/external-dev/bao-slim.owl
@@ -24,7 +24,7 @@
         <dc:license rdf:resource="https://creativecommons.org/licenses/by-sa/4.0/"/>
         <pav:importedFrom>http://bioassayontology.org/bao/bao_complete_merged.owl</pav:importedFrom>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2024-05-06 12:16:44</oboInOwl:date>
+        <oboInOwl:date>2024-05-17 11:19:28</oboInOwl:date>
         <rdfs:comment>Contact:
 Stephan Schurer
 stephan dot schurer at gmail dot com</rdfs:comment>

diff --git a/external-dev/bfo-slim.owl b/external-dev/bfo-slim.owl
@@ -45,7 +45,7 @@
         <dc:license rdf:resource="http://creativecommons.org/licenses/by/3.0/"/>
         <pav:importedFrom>http://purl.obolibrary.org/obo/bfo/classes-only.owl</pav:importedFrom>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2024-05-06 12:16:46</oboInOwl:date>
+        <oboInOwl:date>2024-05-17 11:19:30</oboInOwl:date>
         <rdfs:comment xml:lang="en">The http://purl.obolibary.org/obo/bfo/classes-only.owl variant of BFO (&quot;bfo_classes_only.owl&quot;) includes only the class hierarchy and annotations from the full OWL version of BFO 2: http://purl.obolibary.org/obo/bfo.owl (&quot;bfo.owl&quot;). There are no object properties or logical axioms that use the object properties in bfo_classes_only.owl. As the logical axioms in the bfo_classes_only.owl variant are limited to subclass and disjoint assertions they are much weaker than the logical axioms in bfo.owl.
 
 If you plan to use the relations that define BFO 2, you should import bfo.owl instead of bfo_classes_only.owl. To the extent that the relations are used without importing bfo.owl, be mindful that they should be used in a manner consistent with their use in bfo.owl. Otherwise if your ontology is imported by a another ontology that imports bfo.owl there may be inconsistencies. 

diff --git a/external-dev/bto-slim.owl b/external-dev/bto-slim.owl
@@ -20,7 +20,7 @@
         <pav:importedFrom>http://purl.obolibrary.org/obo/bto.owl</pav:importedFrom>
         <oboInOwl:auto-generated-by>OBO-Edit 2.3.1</oboInOwl:auto-generated-by>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2024-05-06 12:16:51</oboInOwl:date>
+        <oboInOwl:date>2024-05-17 11:19:35</oboInOwl:date>
         <oboInOwl:date>23:10:2021 16:56</oboInOwl:date>
         <oboInOwl:default-namespace>BrendaTissueOBO</oboInOwl:default-namespace>
         <oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>

diff --git a/external-dev/ccont-slim.owl b/external-dev/ccont-slim.owl
@@ -15,7 +15,7 @@
         <pav:importedFrom>https://raw.githubusercontent.com/enanomapper/ontologies/master/internal/ccont-ext.owl</pav:importedFrom>
         <efo:creator>Matthias Ganzinger, [email protected]</efo:creator>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2024-05-06 12:16:53</oboInOwl:date>
+        <oboInOwl:date>2024-05-17 11:19:36</oboInOwl:date>
         <rdfs:label>cell culture ontology (CCONT)</rdfs:label>
         <owl:versionInfo>1.1</owl:versionInfo>
         <owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>

diff --git a/external-dev/chebi-slim.owl b/external-dev/chebi-slim.owl
@@ -17,7 +17,7 @@
     <owl:Ontology rdf:about="http://purl.enanomapper.net/onto/external/chebi-slim.owl">
         <pav:importedFrom>http://ftp.ebi.ac.uk/pub/databases/chebi/ontology/chebi_lite.obo</pav:importedFrom>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2024-05-06 12:19:30</oboInOwl:date>
+        <oboInOwl:date>2024-05-17 11:21:13</oboInOwl:date>
         <oboInOwl:date>27:04:2024 20:53</oboInOwl:date>
         <oboInOwl:default-namespace>chebi_ontology</oboInOwl:default-namespace>
         <oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>

diff --git a/external-dev/cheminf-slim.owl b/external-dev/cheminf-slim.owl
@@ -80,7 +80,7 @@
         <terms:license>http://creativecommons.org/publicdomain/zero/1.0/</terms:license>
         <pav:importedFrom>http://semanticchemistry.github.io/semanticchemistry/ontology/cheminf.owl</pav:importedFrom>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2024-05-06 12:16:56</oboInOwl:date>
+        <oboInOwl:date>2024-05-17 11:19:38</oboInOwl:date>
         <rdfs:comment xml:lang="en">An information artifact is, loosely, a dependent continuant or its bearer that is created as the result of one or more intentional processes. Examples: uniprot, the english language, the contents of this document or a printout of it, the temperature measurements from a weather balloon. For more information, see the project home page at https://github.com/information-artifact-ontology/IAO</rdfs:comment>
         <rdfs:comment>Document containing upporting external terms</rdfs:comment>
         <rdfs:comment>IDs allocated to related efforts: PNO: IAO_0020000-IAO_0020999, D_ACTS: IAO_0021000-IAO_0021999</rdfs:comment>

diff --git a/external-dev/chmo-slim.owl b/external-dev/chmo-slim.owl
@@ -19,7 +19,7 @@
         <terms:license rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
         <pav:importedFrom>http://purl.obolibrary.org/obo/chmo.owl</pav:importedFrom>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2024-05-06 12:19:36</oboInOwl:date>
+        <oboInOwl:date>2024-05-17 11:21:18</oboInOwl:date>
         <oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>
         <oboInOwl:saved-by>batchelorc</oboInOwl:saved-by>
         <owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>

diff --git a/external-dev/clo-slim.owl b/external-dev/clo-slim.owl
@@ -16,6 +16,7 @@
      xmlns:pato="http://purl.obolibrary.org/obo/pato#"
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:ncicp="http://ncicb.nci.nih.gov/xml/owl/EVS/ComplexProperties.xsd#"
+     xmlns:sssom="https://w3id.org/sssom/"
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:uberon="http://purl.obolibrary.org/obo/uberon#"
      xmlns:ubprop="http://purl.obolibrary.org/obo/ubprop#"
@@ -38,9 +39,9 @@
         <terms:license rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
         <pav:importedFrom>http://purl.obolibrary.org/obo/cl.owl</pav:importedFrom>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2024-05-06 12:19:48</oboInOwl:date>
+        <oboInOwl:date>2024-05-17 11:21:30</oboInOwl:date>
         <rdfs:comment>See PMID:15693950, PMID:12799354, PMID:20123131, PMID:21208450; Contact Alexander Diehl, [email protected], University at Buffalo.</rdfs:comment>
-        <owl:versionInfo>2024-04-05</owl:versionInfo>
+        <owl:versionInfo>2024-05-15</owl:versionInfo>
         <owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>
     </owl:Ontology>
 
@@ -430,15 +431,6 @@ WHERE {
 
 
 
-    <!-- http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate -->
-
-
-    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate">
-        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
-    </owl:AnnotationProperty>
-
-
-
     <!-- http://purl.obolibrary.org/obo/go#goslim_agr -->
 
 
@@ -475,6 +467,15 @@ WHERE {
 
 
 
+    <!-- http://purl.obolibrary.org/obo/go#goslim_euk_cellular_processes_ribbon -->
+
+
+    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/go#goslim_euk_cellular_processes_ribbon">
+        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
+    </owl:AnnotationProperty>
+
+
+
     <!-- http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon -->
 
 
@@ -529,6 +530,15 @@ WHERE {
 
 
 
+    <!-- http://purl.obolibrary.org/obo/go#goslim_plant_ribbon -->
+
+
+    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/go#goslim_plant_ribbon">
+        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
+    </owl:AnnotationProperty>
+
+
+
     <!-- http://purl.obolibrary.org/obo/go#goslim_pombe -->
 
 
@@ -547,6 +557,15 @@ WHERE {
 
 
 
+    <!-- http://purl.obolibrary.org/obo/go#goslim_prokaryote_ribbon -->
+
+
+    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/go#goslim_prokaryote_ribbon">
+        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
+    </owl:AnnotationProperty>
+
+
+
     <!-- http://purl.obolibrary.org/obo/go#goslim_synapse -->
 
 
@@ -1147,13 +1166,6 @@ WHERE {
 
 
 
-    <!-- http://purl.org/dc/terms/title -->
-
-
-    <owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/title"/>
-
-
-
     <!-- http://purl.org/pav/importedFrom -->
 
 
@@ -1402,6 +1414,13 @@ WHERE {
 
 
 
+    <!-- https://w3id.org/sssom/mapping_justification -->
+
+
+    <owl:AnnotationProperty rdf:about="https://w3id.org/sssom/mapping_justification"/>
+
+
+
     <!-- 
     ///////////////////////////////////////////////////////////////////////////////////////
     //
@@ -1417,10 +1436,7 @@ WHERE {
     <!-- http://purl.obolibrary.org/obo/BFO_0000040 -->
 
 
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000040">
-        <obo:IAO_0000115 xml:lang="en">An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.</obo:IAO_0000115>
-        <rdfs:label xml:lang="en">material entity</rdfs:label>
-    </owl:Class>
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
 
 
 
@@ -1439,6 +1455,7 @@ WHERE {
         <oboInOwl:hasDbXref>VHOG:0001533</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref>WBbt:0004017</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref>XAO:0003012</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>ZFA:0009000</oboInOwl:hasDbXref>
         <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/cl#cellxgene_subset"/>
         <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/ubprop#_upper_level"/>
         <rdfs:comment>The definition of cell is intended to represent all cells, and thus a cell is defined as a material entity and not an anatomical structure, which implies that it is part of an organism (or the entirety of one).</rdfs:comment>
@@ -1450,6 +1467,18 @@ WHERE {
         <owl:annotatedTarget>A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane.</owl:annotatedTarget>
         <oboInOwl:hasDbXref>CARO:mah</oboInOwl:hasDbXref>
     </owl:Axiom>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CL_0000000"/>
+        <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasDbXref"/>
+        <owl:annotatedTarget>FBbt:00007002</owl:annotatedTarget>
+        <sssom:mapping_justification rdf:resource="https://w3id.org/semapv/vocab/ManualMappingCuration"/>
+    </owl:Axiom>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CL_0000000"/>
+        <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasDbXref"/>
+        <owl:annotatedTarget>ZFA:0009000</owl:annotatedTarget>
+        <sssom:mapping_justification rdf:resource="https://w3id.org/semapv/vocab/UnspecifiedMatching"/>
+    </owl:Axiom>
 
 
 
@@ -1504,6 +1533,7 @@ WHERE {
         <obo:IAO_0000115>A cell found predominately in the blood.</obo:IAO_0000115>
         <oboInOwl:hasDbXref>FMA:62844</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref>MESH:D001773</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>ZFA:0009044</oboInOwl:hasDbXref>
         <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/cl#cellxgene_subset"/>
         <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim"/>
         <rdfs:label>blood cell</rdfs:label>
@@ -1515,6 +1545,12 @@ WHERE {
         <oboInOwl:hasDbXref>GOC:add</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref>GOC:tfm</oboInOwl:hasDbXref>
     </owl:Axiom>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CL_0000081"/>
+        <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasDbXref"/>
+        <owl:annotatedTarget>ZFA:0009044</owl:annotatedTarget>
+        <sssom:mapping_justification rdf:resource="https://w3id.org/semapv/vocab/UnspecifiedMatching"/>
+    </owl:Axiom>
 
 
 
@@ -1645,19 +1681,19 @@ WHERE {
         <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/cl#cellxgene_subset"/>
         <rdfs:label>lung macrophage</rdfs:label>
     </owl:Class>
-    <owl:Axiom>
-        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CL_1001603"/>
-        <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
-        <owl:annotatedTarget>lung macrophages</owl:annotatedTarget>
-        <oboInOwl:hasDbXref>CALOHA:TS-0576</oboInOwl:hasDbXref>
-    </owl:Axiom>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CL_1001603"/>
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
         <owl:annotatedTarget>Circulating macrophages and tissue macrophages (alveolar macrophages) of lung.</owl:annotatedTarget>
         <oboInOwl:hasDbXref>HPA:HPA</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref>NPX:PDR</oboInOwl:hasDbXref>
     </owl:Axiom>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CL_1001603"/>
+        <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
+        <owl:annotatedTarget>lung macrophages</owl:annotatedTarget>
+        <oboInOwl:hasDbXref>CALOHA:TS-0576</oboInOwl:hasDbXref>
+    </owl:Axiom>
 
 
 

diff --git a/external-dev/efo-slim.owl b/external-dev/efo-slim.owl
@@ -55,9 +55,9 @@ License. </dc:rights>
         <terms:license>www.apache.org/licenses/LICENSE-2.0</terms:license>
         <pav:importedFrom>http://www.ebi.ac.uk/efo/efo.owl</pav:importedFrom>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2024-05-06 12:21:38</oboInOwl:date>
-        <rdfs:comment>2024-04-15</rdfs:comment>
-        <owl:versionInfo>3.65.0</owl:versionInfo>
+        <oboInOwl:date>2024-05-17 11:22:50</oboInOwl:date>
+        <rdfs:comment>2024-05-15</rdfs:comment>
+        <owl:versionInfo>3.66.0</owl:versionInfo>
         <owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>
     </owl:Ontology>
 
@@ -324,13 +324,6 @@ Add as annotation triples in the granting ontology</obo:IAO_0000115>
 
 
 
-    <!-- http://purl.obolibrary.org/obo/RO_0040042 -->
-
-
-    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0040042"/>
-
-
-
     <!-- http://purl.obolibrary.org/obo/UBPROP_0000001 -->
 
 

diff --git a/external-dev/envo-slim.owl b/external-dev/envo-slim.owl
@@ -35,7 +35,7 @@
         <doap:GitRepository rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/EnvironmentOntology/envo/</doap:GitRepository>
         <doap:bug-database rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/EnvironmentOntology/envo/issues/</doap:bug-database>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2024-05-06 12:21:46</oboInOwl:date>
+        <oboInOwl:date>2024-05-17 11:22:56</oboInOwl:date>
         <oboInOwl:default-namespace>ENVO</oboInOwl:default-namespace>
         <rdfs:comment>Includes Ontology(OntologyID(OntologyIRI(&lt;http://purl.obolibrary.org/obo/envo/modules/chemical_concentration.owl&gt;) VersionIRI(&lt;null&gt;))) [Axioms: 679 Logical Axioms: 119]</rdfs:comment>
         <rdfs:comment>Includes Ontology(OntologyID(OntologyIRI(&lt;http://purl.obolibrary.org/obo/envo/modules/entity_attribute.owl&gt;) VersionIRI(&lt;null&gt;))) [Axioms: 206 Logical Axioms: 34]</rdfs:comment>

diff --git a/external-dev/fabio-slim.owl b/external-dev/fabio-slim.owl
@@ -33,7 +33,7 @@ FaBiO classes are structured according to the FRBR schema of Works, Expressions,
         <vann:preferredNamespacePrefix>fabio</vann:preferredNamespacePrefix>
         <vann:preferredNamespaceUri rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.org/spar/fabio/</vann:preferredNamespaceUri>
         <oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
-        <oboInOwl:date>2024-05-06 12:21:49</oboInOwl:date>
+        <oboInOwl:date>2024-05-17 11:23:01</oboInOwl:date>
         <rdfs:comment>FaBiO, the FRBR-aligned Bibliographic Ontology, is an ontology for recording and publishing on the Semantic Web bibliographic records of scholarly endeavours. It forms part of SPAR, a suite of Semantic Publishing and Referencing Ontologies.  Other SPAR ontologies are described at http://purl.org/spar/.
 
 This ontology is available at http://purl.org/spar/fabio, and uses the namespace prefix fabio.</rdfs:comment>