Rd0001

Prophage phiSTX2

Location

sequence            start    end      direction
TY-2482_chromosome  5167116  5228139  1
scaffold00001       498591   559460   1

Attachment site: within wrbA

List of genes

	unigene	description	pubmed	size	sequence position
<—	B7MPT9	Phage integrase	19165319	1332	TY-2482_chromosome[5167135:5168466:r]
<—	C8TPU6	Excisionase	19815525	282	TY-2482_chromosome[5168498:5168779:r]
<—	C8TPU7	Putative uncharacterized protein	19815525	249	TY-2482_chromosome[5168828:5169076:r]
<—	C8TPU8	Putative uncharacterized protein	19815525	378	TY-2482_chromosome[5169067:5169444:r]
<—	C8TPU9	Putative uncharacterized protein	19815525	351	TY-2482_chromosome[5169444:5169794:r]
<—	C8U7P4	Putative uncharacterized protein	19815525	210	TY-2482_chromosome[5169833:5170042:r]
<—	C6UPU4	Adenine methylase	19564389	624	TY-2482_chromosome[5170005:5170628:r]
<—	C8U7P2	Probable regulatory protein	19815525	429	TY-2482_chromosome[5170628:5171056:r]
<—	C8U7P1	Probable antirepressor	19815525	636	TY-2482_chromosome[5171115:5171750:r]
—>	E1J6T9	Putative uncharacterized protein		387	TY-2482_chromosome[5171752:5172138]
<—	C8TPV1	Putative uncharacterized protein	19815525	894	TY-2482_chromosome[5172109:5173002:r]
<—	B7MXC9	Putative uncharacterized protein	19165319	231	TY-2482_chromosome[5173008:5173238:r]
<—	C8TPV5	Putative uncharacterized protein	19815525	405	TY-2482_chromosome[5173201:5173605:r]
<—	C8TPV6	Putative uncharacterized protein	19815525	531	TY-2482_chromosome[5173605:5174135:r]
<—	C8U7N0	Putative uncharacterized protein	19815525	441	TY-2482_chromosome[5174433:5174873:r]
<—	C8U7M9	Putative uncharacterized protein	19815525	819	TY-2482_chromosome[5174953:5175771:r]
<—	C8U7M8	Putative uncharacterized protein	19815525	345	TY-2482_chromosome[5175838:5176182:r]
<—	C8U7M7	Putative uncharacterized protein	19815525	585	TY-2482_chromosome[5176260:5176844:r]
<—	C8U7M6	Putative exonuclease	19815525	687	TY-2482_chromosome[5176847:5177533:r]
<—	C8U7M5	Predicted DNA recombination protein Bet	19815525	948	TY-2482_chromosome[5177533:5178480:r]
<—	C8U7M4	Putative uncharacterized protein	19815525	279	TY-2482_chromosome[5178500:5178778:r]
<—	C8U7M3	Putative uncharacterized protein	19815525	279	TY-2482_chromosome[5178802:5179080:r]
<—	C8U7M2	Putative host killing protein	19815525	210	TY-2482_chromosome[5179095:5179304:r]
<—	E7DYR2	Putative uncharacterized protein		672	TY-2482_chromosome[5179378:5180049:r]
—>	B3AW45	Putative uncharacterized protein		192	TY-2482_chromosome[5180205:5180396]
<—	B6ZXE1	Phage regulatory protein, Rha family		771	TY-2482_chromosome[5180308:5181078:r]
<—	Q32F72	Type II site-specific deoxyribonuclease	16275786	951	TY-2482_chromosome[5181710:5182660:r]
<—	Q32F73	Site-specific DNA-methyltransferase	16275786	1467	TY-2482_chromosome[5182660:5184126:r]
<—	Q32F74	Repressor protein CI	16275786	711	TY-2482_chromosome[5184224:5184934:r]
—>	E7DYT8	Cro antirepressor		201	TY-2482_chromosome[5185030:5185230]
—>	C8U7L4	Putative uncharacterized protein	19815525	291	TY-2482_chromosome[5185264:5185554]
—>	B3BAI0	Putative uncharacterized protein		192	TY-2482_chromosome[5185404:5185595]
—>	C8U7L3	Putative uncharacterized protein	19815525	375	TY-2482_chromosome[5185765:5186139]
—>	C8U7L2	Predicted helicase	19815525	1518	TY-2482_chromosome[5186136:5187653]
—>	C8U7L1	Predicted DNA primase	19815525	969	TY-2482_chromosome[5187646:5188614]
—>	C8U7L0	Putative uncharacterized protein	19815525	447	TY-2482_chromosome[5188617:5189063]
—>	C8U7K9	Putative uncharacterized protein	19815525	561	TY-2482_chromosome[5189074:5189634]
—>	O48428	Protein ninH	9680214	192	TY-2482_chromosome[5189634:5189825]
—>	C8U7K8	Putative late gene regulator Q	19815525	432	TY-2482_chromosome[5189821:5190252]
—>		ref|NC_010473|:2875549-2875624|Ile tRNA| [gene=ileY] [locus_tag=ECDH10B_2820]		76	TY-2482_chromosome[5190697:5190772]
—>	B3BQ93	Shiga toxin subunit A (EC 3.2.2.22)		1040	TY-2482_chromosome[5190956:5191995]
—>	C6UP08	Shiga toxin II subunit B	19564389	267	TY-2482_chromosome[5192010:5192276]
—>	B7MRX3	Putative uncharacterized protein	19165319	1968	TY-2482_chromosome[5192732:5194699]
—>	C6V1Q5	Putative uncharacterized protein	19564389	417	TY-2482_chromosome[5194885:5195301]
<—	Q8KTU4	Putative uncharacterized protein	12117937	372	TY-2482_chromosome[5195037:5195408:r]
—>	C6USU1	Lysis protein	19564389	288	TY-2482_chromosome[5195307:5195594]
—>	B6ZXG1	Lysozyme (EC 3.2.1.17)		751	TY-2482_chromosome[5195382:5196132]
—>	E8HWA5	Lysozyme (EC 3.2.1.17) (Fragment)		615	TY-2482_chromosome[5195602:5196216]
—>	C6UP04	Putative antirepressor protein Ant	19564389	567	TY-2482_chromosome[5196409:5196975]
—>	D8ACV6	Bacteriophage lysis protein		615	TY-2482_chromosome[5197139:5197753]
—>	C8U7J7	Putative uncharacterized protein	19815525	549	TY-2482_chromosome[5197770:5198318]
—>	C8UMI7	Conserved predicted protein	19815525	216	TY-2482_chromosome[5198340:5198555]
—>	C8UMI8	Putative small subunit terminase	19815525	804	TY-2482_chromosome[5198614:5199417]
—>	C8UMI9	Putative terminase large subunit	19815525	1704	TY-2482_chromosome[5199401:5201104]
—>	B5YYP6	Putative uncharacterized protein		2142	TY-2482_chromosome[5201107:5203248]
—>	C8UMJ1	Putative uncharacterized protein	19815525	1005	TY-2482_chromosome[5203409:5204413]
—>	C8U7J2	Putative uncharacterized protein	19815525	1212	TY-2482_chromosome[5204440:5205651]
—>	C8UMJ3	Putative uncharacterized protein	19815525	387	TY-2482_chromosome[5205710:5206096]
—>	C8UMJ4	Putative uncharacterized protein	19815525	459	TY-2482_chromosome[5206149:5206607]
—>	B5YYN8	Putative uncharacterized protein		561	TY-2482_chromosome[5206594:5207154]
—>	C8U7I8	Putative uncharacterized protein	19815525	648	TY-2482_chromosome[5207157:5207804]
—>	C8U7I7	Predicted tail fiber protein	19815525	2190	TY-2482_chromosome[5207804:5209993]
—>	C6UNY7	Putative uncharacterized protein	19564389	1689	TY-2482_chromosome[5210763:5212451]
—>	C8UMK2	Predicted tail tip fiber protein	19815525	1266	TY-2482_chromosome[5212451:5213716]
—>	C8UMK3	Predicted outer membrane protein	19815525	276	TY-2482_chromosome[5213734:5214009]
—>	C6UNY5	Putative uncharacterized protein	19564389	615	TY-2482_chromosome[5214018:5214632]
—>	C8UMK5	Putative outer membrane protein Lom	19815525	732	TY-2482_chromosome[5214726:5215457]
—>	C6UNY3	Putative uncharacterized protein	19564389	399	TY-2482_chromosome[5215890:5216288]
—>	C8UMK7	Putative uncharacterized protein	19815525	654	TY-2482_chromosome[5216385:5217038]
—>	C8UMK8	Putative uncharacterized protein	19815525	444	TY-2482_chromosome[5217044:5217487]
—>	C8U7H6	Putative uncharacterized protein	19815525	249	TY-2482_chromosome[5217500:5217748]
—>	C8UML0	Putative uncharacterized protein	19815525	1263	TY-2482_chromosome[5217762:5219024]
—>	C8UML1	Putative uncharacterized protein	19815525	8379	TY-2482_chromosome[5219097:5227475]
—>	C8TNB3	Putative uncharacterized protein	19815525	369	TY-2482_chromosome[5227816:5228184]

This list was extracted from [Era7_EHEC_BGI_V4_Annotation.txt](/ehec-outbreak-crowdsourced/BGI-data-analysis/strains/TY2482/seqProject/BGI/annotations/era7bioinformatics/era7_BGI_V4_annotation/Era7_EHEC_BGI_V4_Annotation.txt) using [rod2html.py](/ehec-outbreak-crowdsourced/BGI-data-analysis/strains/comparativeAnalysis/Regions-of-difference/rod2html.py). Sequence positions are formatted as Emboss Universal Sequence Addresses.