Code

Code reorganization#5

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earmingol merged 19 commits intomasterearmingol/cell2cell:masterfrom code_reorganizationearmingol/cell2cell:code_reorganizationCopy head branch name to clipboardApr 26, 2020

+724-696

Commits

Commits on Apr 10, 2020

• Renamed to parameters communication_score and cci_score

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Commits on Apr 16, 2020

• Added CCI scores from matrix multiplication (all cell pairs simultaneously)

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• Added new methods

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• Fixed PPI network template for cells

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Commits on Apr 18, 2020

• Added communication scores

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• Future new features

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• New format of scores for CCIs and CCC

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• Place for future features

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• Changes in way of subsampling

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• Adapted to new code structure

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• Adapted to new code structure

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• Minor changes

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  ec4c7e6

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• New code structure

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Commits on Apr 26, 2020

• Added functions to manipulate dataframes

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  059fc35

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• Re-organized functions for permuting PPI lists

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• Minor changes

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• Minor changes

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• Moved functions to study PPI enrichment into Communication Scores in InteractionSpace

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• Run PCoA only if CCI matrix is symetric ('undirected' interactions)

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