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dib-lab / dammit Public

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Expose `--rename-regex` in main annotate CLI#221

Merged

camillescott merged 10 commits intov2_stagingdib-lab/dammit:v2_stagingfrom expose_rename_regexdib-lab/dammit:expose_rename_regexCopy head branch name to clipboard

Feb 12, 2021

+339-20

Conversation Commits10 (10)Checks Files changed

Commits

Commits on Feb 3, 2021

Add --name-map option to dammit annotate-fasta to remap names back to originals
camillescott
committed
Add test data for dammit annotate-fasta --name-map
camillescott
committed
Use iloc instead of bracket indexing, as bracket indexing doesn't actually index positionally
camillescott
committed
Expose --rename/--no-rename in annotate CLI to enable mapping of renamed transcripts back to originals
camillescott
committed
Expose --split-regex in the dammit run annotate CLI with --regex-rename
camillescott
committed
Fix Infernal typo
camillescott
committed

Commits on Feb 12, 2021

Merge branch 'v2_staging' into expose_rename_regex
camillescott
committed
Update generate-test-data.sh with --regex-rename
camillescott
committed
Add --regex-rename test
camillescott
committed
Actually add regex-rename test-data
camillescott
committed

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