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updated version number
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fidelram committed Mar 27, 2018
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32 changes: 32 additions & 0 deletions docs/content/News.rst
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News and Developments
=====================

Release 2.1.1
------------
**27 March 2018**

This release fixes a problem related to python3 in which chromosome names were of bytes type

Release 2.1
-----------
**5 March 2018**

The 2.1 version of HiCExplorer comes with new features and bugfixes.

- Adding the new feature `hicAggregateContacts`: A tool that allows plotting of aggregated Hi-C sub-matrices of a specified list of positions.
- Many improvements to the documentation and the help text. Thanks to @GinaRe and @gtrichard.
- hicPlotMatrix:
- supports only bigwig files for an additional data track.
- the argument `--pca` was renamed to `--bigwig`
- Smoothing the bigwig values to neighboring bins if no data is present there
- Fixes to a bug concerning a crash of `tight_layout`
- Adding the possibility to flip the sign of the values of the bigwig track
- Adding the possibility to scale the values of the bigwig track
- hicPlotViewpoint: Adds a feature to plot multiple matrices in one image
- cooler file format:
- supports mcool files
- applies correction factors if present
- optionally reads `bin['weight']`
- fixes:
- a crash in hicPlotTads if `horizontal lines` were used
- checks if all characters of a title are ASCII. If not they are converted to the closest looking one.
- Updated and fixate version number of the dependencies


Release 2.0
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2 changes: 1 addition & 1 deletion hicexplorer/_version.py
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# This file is originally generated from Git information by running 'setup.py
# version'. Distribution tarballs contain a pre-generated copy of this file.

__version__ = '2.0'
__version__ = '2.1.1'

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