Name		Name	Last commit message	Last commit date
Latest commit History 17 Commits
AAseq.txt		AAseq.txt
BLOSUM_Matrix.py		BLOSUM_Matrix.py
MostLeastConserved.py		MostLeastConserved.py
PAM_Matrix.py		PAM_Matrix.py
PairwiseSequenceAlignment.py		PairwiseSequenceAlignment.py
PositiveAutoregulation.py		PositiveAutoregulation.py
README.md		README.md
TransitionProbabilityMatrix.py		TransitionProbabilityMatrix.py

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Computational Biology

Transition Probability Matrix

Generation of a random transition rate matrix 𝑄 to model the rates of nucleic acid substitutions.

PAM and BLOSUM Matrices

Generation of PAM and BLOSUM matrices to have alignment scores for closely related sequences and divergent sequences respectively.

Finding the Most and Least Conserved Amino Acid Sequence Using PAM and BLOSUM log-odds Scoring Matrices

Pairwise Sequence Alignment

Positive Autoregulation Model

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