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fix(call): snv print debugging
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davidlougheed committed Jun 11, 2024
1 parent 65dee6a commit 745ea7d
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion strkit/call/call_locus.py
Original file line number Diff line number Diff line change
Expand Up @@ -518,7 +518,7 @@ def call_alleles_with_incorporated_snvs(

if print_snvs:
print(
rn, f"\t{read['cn']:.0f}", "\t", cat_strs(read_useful_snv_bases), n_non_blank_hq_read_useful_snv_bases)
rn, f"\t{read['cn']:.0f}", "\t", read_useful_snv_bases, n_non_blank_hq_read_useful_snv_bases)

n_reads_with_many_snvs: int = len(read_dict_items_with_many_snvs)
n_reads_with_at_least_one_snv: int = len(read_dict_items_with_at_least_one_snv)
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