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chore(rebuild): Merge pull request ome#191 from giovp/doc/omero
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improve description of omero metadata

SHA: 99b8765
Reason: push, by @d-v-b

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
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will-moore and github-actions[bot] committed Aug 1, 2023
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235 changes: 203 additions & 32 deletions 0.1/index.html
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Original file line number Diff line number Diff line change
Expand Up @@ -1238,14 +1238,15 @@
grid-column: 2;
width: auto;
margin-right: 1rem;
border-bottom: 3px solid transparent;
margin-bottom: -3px;
}
#toc .content:hover,
#toc .content:focus {
background: rgba(75%, 75%, 75%, .25);
background: var(--a-hover-bg);
border-bottom: 3px solid #054572;
border-bottom: 3px solid var(--toclink-underline);
margin-bottom: -3px;
border-bottom-color: #054572;
border-bottom-color: var(--toclink-underline);
}
#toc li li li .content {
margin-left: 1rem;
Expand Down Expand Up @@ -1487,10 +1488,11 @@
}
}
</style>
<meta content="Bikeshed version d9f9c3533, updated Fri Mar 10 11:31:29 2023 -0800" name="generator">
<meta content="Bikeshed version d29f71adb, updated Wed Jul 19 11:08:56 2023 -0700" name="generator">
<link href="https://ngff.openmicroscopy.org/0.1/" rel="canonical">
<meta content="4f5049ece023d44684381ec2ac9ec47bfb5f841b" name="document-revision">
<style>/* style-autolinks */
<link href="https://www.w3.org/2008/site/images/favicon.ico" rel="icon">
<meta content="99b8765c0f1b9aa6072b030c8f15f75c082a1e5e" name="document-revision">
<style>/* Boilerplate: style-autolinks */
.css.css, .property.property, .descriptor.descriptor {
color: var(--a-normal-text);
font-size: inherit;
Expand Down Expand Up @@ -1551,8 +1553,16 @@
[data-link-type=biblio] {
white-space: pre;
}

@media (prefers-color-scheme: dark) {
:root {
--selflink-text: black;
--selflink-bg: silver;
--selflink-hover-text: white;
}
}
</style>
<style>/* style-colors */
<style>/* Boilerplate: style-colors */

/* Any --*-text not paired with a --*-bg is assumed to have a transparent bg */
:root {
Expand Down Expand Up @@ -1661,8 +1671,120 @@

--editedrec-bg: darkorange;
}

@media (prefers-color-scheme: dark) {
:root {
--text: #ddd;
--bg: black;

--unofficial-watermark: url("data:image/svg+xml,%3Csvg xmlns='http://www.w3.org/2000/svg' width='400' height='400'%3E%3Cg fill='%23100808' transform='translate(200 200) rotate(-45) translate(-200 -200)' stroke='%23100808' stroke-width='3'%3E%3Ctext x='50%25' y='220' style='font: bold 70px sans-serif; text-anchor: middle; letter-spacing: 6px;'%3EUNOFFICIAL%3C/text%3E%3Ctext x='50%25' y='305' style='font: bold 70px sans-serif; text-anchor: middle; letter-spacing: 6px;'%3EDRAFT%3C/text%3E%3C/g%3E%3C/svg%3E");

--logo-bg: #1a5e9a;
--logo-active-bg: #c00;
--logo-text: white;

--tocnav-normal-text: #999;
--tocnav-normal-bg: var(--bg);
--tocnav-hover-text: var(--tocnav-normal-text);
--tocnav-hover-bg: #080808;
--tocnav-active-text: #f44;
--tocnav-active-bg: var(--tocnav-normal-bg);

--tocsidebar-text: var(--text);
--tocsidebar-bg: #080808;
--tocsidebar-shadow: rgba(255,255,255,.1);
--tocsidebar-heading-text: hsla(203,20%,40%,.7);

--toclink-text: var(--text);
--toclink-underline: #6af;
--toclink-visited-text: var(--toclink-text);
--toclink-visited-underline: #054572;

--heading-text: #8af;

--hr-text: var(--text);

--algo-border: #456;

--del-text: #f44;
--del-bg: transparent;
--ins-text: #4a4;
--ins-bg: transparent;

--a-normal-text: #6af;
--a-normal-underline: #555;
--a-visited-text: var(--a-normal-text);
--a-visited-underline: var(--a-normal-underline);
--a-hover-bg: rgba(25%, 25%, 25%, .2);
--a-active-text: #f44;
--a-active-underline: var(--a-active-text);

--borderedblock-bg: rgba(255, 255, 255, .05);

--blockquote-border: silver;
--blockquote-bg: var(--borderedblock-bg);
--blockquote-text: currentcolor;

--issue-border: #e05252;
--issue-bg: var(--borderedblock-bg);
--issue-text: var(--text);
--issueheading-text: hsl(0deg, 70%, 70%);

--example-border: hsl(50deg, 90%, 60%);
--example-bg: var(--borderedblock-bg);
--example-text: var(--text);
--exampleheading-text: hsl(50deg, 70%, 70%);

--note-border: hsl(120deg, 100%, 35%);
--note-bg: var(--borderedblock-bg);
--note-text: var(--text);
--noteheading-text: hsl(120, 70%, 70%);
--notesummary-underline: silver;

--assertion-border: #444;
--assertion-bg: var(--borderedblock-bg);
--assertion-text: var(--text);

--advisement-border: orange;
--advisement-bg: #222218;
--advisement-text: var(--text);
--advisementheading-text: #f84;

--warning-border: red;
--warning-bg: hsla(40,100%,20%,0.95);
--warning-text: var(--text);

--amendment-border: #330099;
--amendment-bg: #080010;
--amendment-text: var(--text);
--amendmentheading-text: #cc00ff;

--def-border: #8ccbf2;
--def-bg: #080818;
--def-text: var(--text);
--defrow-border: #136;

--datacell-border: silver;

--indexinfo-text: #aaa;

--indextable-hover-text: var(--text);
--indextable-hover-bg: #181818;

--outdatedspec-bg: rgba(255, 255, 255, .5);
--outdatedspec-text: black;
--outdated-bg: maroon;
--outdated-text: white;
--outdated-shadow: red;

--editedrec-bg: darkorange;
}
/* In case a transparent-bg image doesn't expect to be on a dark bg,
which is quite common in practice... */
img { background: white; }
}
</style>
<style>/* style-counters */
<style>/* Boilerplate: style-counters */
body {
counter-reset: example figure issue;
}
Expand Down Expand Up @@ -1691,7 +1813,7 @@
content: "Figure " counter(figure) " ";
}
</style>
<style>/* style-issues */
<style>/* Boilerplate: style-issues */
a[href].issue-return {
float: right;
float: inline-end;
Expand All @@ -1700,7 +1822,7 @@
text-decoration: none;
}
</style>
<style>/* style-md-lists */
<style>/* Boilerplate: style-md-lists */
/* This is a weird hack for me not yet following the commonmark spec
regarding paragraph and lists. */
[data-md] > :first-child {
Expand All @@ -1710,7 +1832,7 @@
margin-bottom: 0;
}
</style>
<style>/* style-selflinks */
<style>/* Boilerplate: style-selflinks */

:root {
--selflink-text: white;
Expand Down Expand Up @@ -1770,7 +1892,7 @@
.heading > a.self-link::before { content: "§"; }
dfn > a.self-link::before { content: "#"; }
</style>
<style>/* style-syntax-highlighting */
<style>/* Boilerplate: style-syntax-highlighting */

code.highlight { padding: .1em; border-radius: .3em; }
pre.highlight, pre > code.highlight { display: block; padding: 1em; margin: .5em 0; overflow: auto; border-radius: 0; }
Expand Down Expand Up @@ -1828,12 +1950,76 @@
c-[vg] { color: #0077aa } /* Name.Variable.Global */
c-[vi] { color: #0077aa } /* Name.Variable.Instance */
c-[il] { color: #000000 } /* Literal.Number.Integer.Long */


@media (prefers-color-scheme: dark) {
.highlight:not(.idl) { background: rgba(255, 255, 255, .05); }

c-[a] { color: #d33682 } /* Keyword.Declaration */
c-[b] { color: #d33682 } /* Keyword.Type */
c-[c] { color: #2aa198 } /* Comment */
c-[d] { color: #2aa198 } /* Comment.Multiline */
c-[e] { color: #268bd2 } /* Name.Attribute */
c-[f] { color: #b58900 } /* Name.Tag */
c-[g] { color: #cb4b16 } /* Name.Variable */
c-[k] { color: #d33682 } /* Keyword */
c-[l] { color: #657b83 } /* Literal */
c-[m] { color: #657b83 } /* Literal.Number */
c-[n] { color: #268bd2 } /* Name */
c-[o] { color: #657b83 } /* Operator */
c-[p] { color: #657b83 } /* Punctuation */
c-[s] { color: #6c71c4 } /* Literal.String */
c-[t] { color: #6c71c4 } /* Literal.String.Single */
c-[u] { color: #6c71c4 } /* Literal.String.Double */
c-[ch] { color: #2aa198 } /* Comment.Hashbang */
c-[cp] { color: #2aa198 } /* Comment.Preproc */
c-[cpf] { color: #2aa198 } /* Comment.PreprocFile */
c-[c1] { color: #2aa198 } /* Comment.Single */
c-[cs] { color: #2aa198 } /* Comment.Special */
c-[kc] { color: #d33682 } /* Keyword.Constant */
c-[kn] { color: #d33682 } /* Keyword.Namespace */
c-[kp] { color: #d33682 } /* Keyword.Pseudo */
c-[kr] { color: #d33682 } /* Keyword.Reserved */
c-[ld] { color: #657b83 } /* Literal.Date */
c-[nc] { color: #268bd2 } /* Name.Class */
c-[no] { color: #268bd2 } /* Name.Constant */
c-[nd] { color: #268bd2 } /* Name.Decorator */
c-[ni] { color: #268bd2 } /* Name.Entity */
c-[ne] { color: #268bd2 } /* Name.Exception */
c-[nf] { color: #268bd2 } /* Name.Function */
c-[nl] { color: #268bd2 } /* Name.Label */
c-[nn] { color: #268bd2 } /* Name.Namespace */
c-[py] { color: #268bd2 } /* Name.Property */
c-[ow] { color: #657b83 } /* Operator.Word */
c-[mb] { color: #657b83 } /* Literal.Number.Bin */
c-[mf] { color: #657b83 } /* Literal.Number.Float */
c-[mh] { color: #657b83 } /* Literal.Number.Hex */
c-[mi] { color: #657b83 } /* Literal.Number.Integer */
c-[mo] { color: #657b83 } /* Literal.Number.Oct */
c-[sa] { color: #6c71c4 } /* Literal.String.Affix */
c-[sb] { color: #6c71c4 } /* Literal.String.Backtick */
c-[sc] { color: #6c71c4 } /* Literal.String.Char */
c-[dl] { color: #6c71c4 } /* Literal.String.Delimiter */
c-[sd] { color: #6c71c4 } /* Literal.String.Doc */
c-[se] { color: #6c71c4 } /* Literal.String.Escape */
c-[sh] { color: #6c71c4 } /* Literal.String.Heredoc */
c-[si] { color: #6c71c4 } /* Literal.String.Interpol */
c-[sx] { color: #6c71c4 } /* Literal.String.Other */
c-[sr] { color: #6c71c4 } /* Literal.String.Regex */
c-[ss] { color: #6c71c4 } /* Literal.String.Symbol */
c-[fm] { color: #268bd2 } /* Name.Function.Magic */
c-[vc] { color: #cb4b16 } /* Name.Variable.Class */
c-[vg] { color: #cb4b16 } /* Name.Variable.Global */
c-[vi] { color: #cb4b16 } /* Name.Variable.Instance */
c-[vm] { color: #cb4b16 } /* Name.Variable.Magic */
c-[il] { color: #657b83 } /* Literal.Number.Integer.Long */
}
</style>
<body class="h-entry">
<div class="head">
<img alt="OME logo (6 circles in a hexagon)" src="http://www.openmicroscopy.org/img/logos/ome-logomark.svg" style="float:right;width:42px;height:42px;">
<h1 class="p-name no-ref" id="title">Next-generation file formats (NGFF)</h1>
<h2 class="no-num no-toc no-ref heading settled" id="subtitle"><span class="content">Final Community Group Report, <time class="dt-updated" datetime="2023-03-18">18 March 2023</time></span></h2>
<h2 class="no-num no-toc no-ref heading settled" id="subtitle"><span class="content">Final Community Group Report, <time class="dt-updated" datetime="2023-08-01">1 August 2023</time></span></h2>
<div data-fill-with="spec-metadata">
<dl>
<dt>This version:
Expand Down Expand Up @@ -1899,7 +2085,6 @@ <h2 class="no-num no-toc no-ref" id="contents">Table of Contents</h2>
<a href="#w3c-conformance"><span class="secno"></span> <span class="content">Conformance</span></a>
<ol class="toc">
<li><a href="#w3c-conventions"><span class="secno"></span> <span class="content">Document conventions</span></a>
<li><a href="#w3c-conformant-algorithms"><span class="secno"></span> <span class="content">Conformant Algorithms</span></a>
</ol>
<li>
<a href="#index"><span class="secno"></span> <span class="content">Index</span></a>
Expand Down Expand Up @@ -1995,15 +2180,15 @@ <h3 class="heading settled" data-level="2.1" id="image-layout"><span class="secn
│ ├── 0.0.0.0.0 # Chunks are stored with the flat directory layout.
│ │ ... # Each dotted component of the chunk file represents
│ └── t.c.z.y.x # a "chunk coordinate", where the maximum coordinate
│ # will be &lt;code data-opaque bs-autolink-syntax='`dimension_size / chunk_size`'>dimension_size / chunk_size&lt;/code>.
│ # will be `dimension_size / chunk_size`.
│
└── labels
│
├── .zgroup # The labels group is a container which holds a list of labels to make the objects easily discoverable
│
├── .zattrs # All labels will be listed in &lt;code data-opaque bs-autolink-syntax='`.zattrs`'>.zattrs&lt;/code> e.g. &lt;code data-opaque bs-autolink-syntax='`{ &amp;quot;labels&amp;quot;: [ &amp;quot;original/0&amp;quot; ] }`'>{ "labels": [ "original/0" ] }&lt;/code>
│ # Each dimension of the label &lt;code data-opaque bs-autolink-syntax='`(t, c, z, y, x)`'>(t, c, z, y, x)&lt;/code> should be either the same as the
│ # corresponding dimension of the image, or &lt;code data-opaque bs-autolink-syntax='`1`'>1&lt;/code> if that dimension of the label
├── .zattrs # All labels will be listed in `.zattrs` e.g. `{ "labels": [ "original/0" ] }`
│ # Each dimension of the label `(t, c, z, y, x)` should be either the same as the
│ # corresponding dimension of the image, or `1` if that dimension of the label
│ # is irrelevant.
│
└── original # Intermediate folders are permitted but not necessary and currently contain no extra metadata.
Expand Down Expand Up @@ -2370,20 +2555,6 @@ <h3 class="no-ref no-num heading settled" id="w3c-conventions"><span class="cont
with <code>class="note"</code>,
like this: </p>
<p class="note" role="note">Note, this is an informative note.</p>
<h3 class="no-ref no-num heading settled" id="w3c-conformant-algorithms"><span class="content">Conformant Algorithms</span><a class="self-link" href="#w3c-conformant-algorithms"></a></h3>
<p>Requirements phrased in the imperative as part of algorithms
(such as "strip any leading space characters"
or "return false and abort these steps")
are to be interpreted with the meaning of the key word
("must", "should", "may", etc)
used in introducing the algorithm. </p>
<p>Conformance requirements phrased as algorithms or specific steps
can be implemented in any manner,
so long as the end result is equivalent.
In particular, the algorithms defined in this specification
are intended to be easy to understand
and are not intended to be performant.
Implementers are encouraged to optimize. </p>
</div>
<script src="https://www.w3.org/scripts/TR/2021/fixup.js"></script>
<h2 class="no-num no-ref heading settled" id="index"><span class="content">Index</span><a class="self-link" href="#index"></a></h2>
Expand Down
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