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Update to 4.4.4 #9
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Hi! This is the friendly automated conda-forge-linting service. I just wanted to let you know that I linted all conda-recipes in your PR ( |
@kmuehlbauer you were successful using Linux: /opt/conda/envs/_build/bin/gfortran -O2 -g -DNDEBUG CMakeFiles/f90tst_fill2.dir/f90tst_fill2.f90.o -o f90tst_fill2 -L/feedstock_root/build_artefacts/work/netcdf-fortran-4.4.4/fortran -L/feedstock_root/build_artefacts/work/netcdf-fortran-4.4.4/libsrc ../fortran/libnetcdff.a /opt/conda/envs/_build/lib/libnetcdf.so.11.0.0 /opt/conda/envs/_build/lib/libmfhdf.so /opt/conda/envs/_build/lib/libdf.so /opt/conda/envs/_build/lib/libhdf5_hl.so /opt/conda/envs/_build/lib/libhdf5.so /usr/lib64/librt.so /opt/conda/envs/_build/lib/libz.so /usr/lib64/libdl.so /usr/lib64/libm.so /opt/conda/envs/_build/lib/libcurl.so -Wl,-rpath,/feedstock_root/build_artefacts/work/netcdf-fortran-4.4.4/fortran:/feedstock_root/build_artefacts/work/netcdf-fortran-4.4.4/libsrc
/opt/rh/devtoolset-2/root/usr/bin/ld: warning: libjpeg.so.9, needed by /opt/conda/envs/_build/lib/libmfhdf.so, not found (try using -rpath or -rpath-link)
/opt/rh/devtoolset-2/root/usr/bin/ld: warning: libssl.so.1.0.0, needed by /opt/conda/envs/_build/lib/libcurl.so, not found (try using -rpath or -rpath-link)
/opt/rh/devtoolset-2/root/usr/bin/ld: warning: libcrypto.so.1.0.0, needed by /opt/conda/envs/_build/lib/libcurl.so, not found (try using -rpath or -rpath-link)
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_connect'
/opt/conda/envs/_build/lib/libdf.so: undefined reference to `jpeg_set_defaults@LIBJPEG_9.0'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `X509_check_issued'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_CTX_set_srp_password'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `BIO_free'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `BIO_s_mem'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `UI_method_get_reader'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `UI_get_string_type'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `sk_pop_free'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `BIO_ctrl'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `DES_set_odd_parity'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `UI_get0_user_data'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `BN_num_bits'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `ENGINE_get_next'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `PEM_read_X509'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `MD4_Update'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `ASN1_STRING_to_UTF8'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `GENERAL_NAMES_free'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `PKCS12_free'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_get1_session'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_set_session'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `ASN1_STRING_length'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `ENGINE_get_first'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `UI_OpenSSL'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `UI_method_get_closer'
/opt/conda/envs/_build/lib/libdf.so: undefined reference to `jpeg_CreateCompress@LIBJPEG_9.0'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `OPENSSL_add_all_algorithms_noconf'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `OPENSSL_load_builtin_modules'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `X509_NAME_get_index_by_NID'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_CTX_set_verify'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `UI_method_set_writer'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_SESSION_free'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `RAND_load_file'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `MD5_Init'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `sk_value'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_ctrl'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_load_error_strings'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `UI_method_get_opener'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `MD5_Final'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `UI_method_set_closer'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `CRYPTO_malloc'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `X509_STORE_set_flags'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSLv2_client_method'
/opt/conda/envs/_build/lib/libdf.so: undefined reference to `jpeg_set_quality@LIBJPEG_9.0'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `PKCS12_PBE_add'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_CTX_check_private_key'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_CTX_use_certificate_chain_file'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `OCSP_BASICRESP_free'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_get_peer_certificate'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `BIO_new'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `X509_get_subject_name'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_free'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `OCSP_RESPONSE_free'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `ERR_clear_error'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `X509_NAME_get_entry'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `d2i_PKCS12_fp'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SHA256_Init'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `CONF_modules_free'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `OCSP_basic_verify'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `ENGINE_cleanup'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `BIO_puts'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `i2t_ASN1_OBJECT'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_CTX_set_alpn_protos'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_CTX_add_client_CA'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_get_certificate'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `RAND_egd'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_CTX_set_default_passwd_cb_userdata'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `CRYPTO_free'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSLv3_client_method'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `X509_get_ext_d2i'
/opt/conda/envs/_build/lib/libdf.so: undefined reference to `jpeg_resync_to_restart@LIBJPEG_9.0'
/opt/conda/envs/_build/lib/libdf.so: undefined reference to `jpeg_destroy_compress@LIBJPEG_9.0'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `ERR_free_strings'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `d2i_OCSP_RESPONSE'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_set_connect_state'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_CTX_new'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `OCSP_response_status'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_get_verify_result'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `OCSP_response_status_str'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `X509_load_crl_file'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `UI_create_method'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_read'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `RAND_bytes'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_set_fd'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `EVP_cleanup'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_CTX_use_PrivateKey'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `X509_NAME_print_ex'
/opt/conda/envs/_build/lib/libdf.so: undefined reference to `jpeg_finish_decompress@LIBJPEG_9.0'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_pending'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `X509_verify_cert_error_string'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_get_current_cipher'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `UI_destroy_method'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `ENGINE_load_private_key'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `OCSP_crl_reason_str'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `X509_LOOKUP_file'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `ENGINE_finish'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `RAND_add'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_CTX_load_verify_locations'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_CIPHER_get_name'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `ASN1_STRING_type'
/opt/conda/envs/_build/lib/libdf.so: undefined reference to `jpeg_write_scanlines@LIBJPEG_9.0'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `ENGINE_get_id'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `ERR_get_error'
/opt/conda/envs/_build/lib/libdf.so: undefined reference to `jpeg_read_header@LIBJPEG_9.0'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `i2a_ASN1_OBJECT'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSLv23_client_method'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `ASN1_INTEGER_get'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `sk_num'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `OCSP_cert_status_str'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `ASN1_STRING_data'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `EVP_PKEY_free'
/opt/conda/envs/_build/lib/libdf.so: undefined reference to `jpeg_CreateDecompress@LIBJPEG_9.0'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_get_privatekey'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `ERR_error_string'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `RAND_file_name'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `ENGINE_ctrl_cmd'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `ERR_peek_error'
/opt/conda/envs/_build/lib/libdf.so: undefined reference to `jpeg_finish_compress@LIBJPEG_9.0'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_CTX_use_PrivateKey_file'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SHA256_Update'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_library_init'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `OCSP_check_validity'
/opt/conda/envs/_build/lib/libdf.so: undefined reference to `jpeg_start_decompress@LIBJPEG_9.0'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `UI_method_set_opener'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_CTX_set_default_passwd_cb'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_CTX_use_certificate_file'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `X509V3_EXT_print'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `MD5_Update'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SHA256_Final'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `UI_method_get_writer'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `X509_get_pubkey'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_CTX_set_cipher_list'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `BIO_printf'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_new'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_CTX_use_certificate'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `X509_get_serialNumber'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `UI_get_input_flags'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_write'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `OCSP_resp_get0'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_CTX_get_cert_store'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `i2d_X509_PUBKEY'
/opt/conda/envs/_build/lib/libdf.so: undefined reference to `jpeg_start_compress@LIBJPEG_9.0'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `OCSP_response_get1_basic'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `CRYPTO_cleanup_all_ex_data'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_CTX_set_msg_callback'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `X509_free'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `sk_pop'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `ERR_error_string_n'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `DES_set_key'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_shutdown'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_CTX_set_srp_username'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `ASN1_TIME_print'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_version'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `DES_ecb_encrypt'
/opt/conda/envs/_build/lib/libdf.so: undefined reference to `jpeg_destroy_decompress@LIBJPEG_9.0'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_get_shutdown'
/opt/conda/envs/_build/lib/libdf.so: undefined reference to `jpeg_std_error@LIBJPEG_9.0'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `ENGINE_set_default'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_CTX_set_next_proto_select_cb'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_COMP_free_compression_methods'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `X509_STORE_add_lookup'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `X509_get_issuer_name'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `OCSP_single_get0_status'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `X509_EXTENSION_get_object'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `RAND_status'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `EVP_PKEY_copy_parameters'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `X509_EXTENSION_get_data'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `ENGINE_free'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `ENGINE_load_builtin_engines'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `MD4_Final'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_get0_alpn_selected'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_CTX_ctrl'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `BN_print'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `UI_method_set_reader'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `MD4_Init'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `CONF_modules_load_file'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `ENGINE_ctrl'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `ERR_remove_thread_state'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `X509_NAME_ENTRY_get_data'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_get_error'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `PEM_write_bio_X509'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `ENGINE_by_id'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_CTX_free'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `OCSP_resp_count'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `ENGINE_init'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `PKCS12_parse'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSLeay'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `ASN1_STRING_print'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `SSL_get_peer_cert_chain'
/opt/conda/envs/_build/lib/libdf.so: undefined reference to `jpeg_read_scanlines@LIBJPEG_9.0'
/opt/conda/envs/_build/lib/libcurl.so: undefined reference to `UI_set_result'
collect2: error: ld returned 1 exit status
make[2]: *** [nf_test/f90tst_fill2] Error 1
make[1]: *** [nf_test/CMakeFiles/f90tst_fill2.dir/all] Error 2
make: *** [all] Error 2
Command failed: /bin/bash -x -e /recipe_root/build.sh OS X: cc: error: unrecognized command line option ‘-fmacro-backtrace-limit=0’
make[2]: *** [fortran/CMakeFiles/netcdff.dir/nf_lib.c.o] Error 1
make[1]: *** [fortran/CMakeFiles/netcdff.dir/all] Error 2
make: *** [all] Error 2 |
@ocefpaf This is also complained about in the Circle-Logs:
I'm no |
WIP: fix rpath issue
@ocefpaf Works on linux, but |
In CMakeLists.txt Line 486 |
Yep. Dropping that for now. (See the latest commit.)
😖
Sound reasonable. I will look into it soon. |
@ocefpaf For checking for shared-library it should be build first 😁, until now only static is built. |
Success! Thanks @kmuehlbauer!! |
4.4.4 Released May 13, 2016
Corrected an issue where cmake-based builds specifying
USE_LOGGING
were not seeing expected behavior. The issue was reported, and subsequently fixed, by Neil Carlson at Los Alamos Nat'l Laboratory. See Github Pull Request #44 for more information.Integrated improvements provided by Richard Weed. For a complete list of modifications, see the file
docs/netcdf_fortran_4.4.2dev_notes_RW.pdf
. It is highly detailed and worth reading!The highlights of the improvements are as follows:
NC_MAX_DIM
constant for arrays has been removed and replaced with dynamically-allocated arrays.nc_open_mem()
in the C library, allowing for the creation of "in memory" files.PS: Trying to build
netcdf-fortran
withcmake
.