docs(Readme,Docs/Index.Md,Docs/Examples.Md): changed link in readme d…

…irectly to examples.md rather than docs because doesn't display properly. fixed links in examples
compbiocore · Apr 5, 2019 · 7f3f108 · 7f3f108
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diff --git a/README.md b/README.md
@@ -17,7 +17,7 @@ To use VIVA, you must download the Julia programming language version >=1.0 and
 
 ## Getting Started: 
 
-Note: Once you have set up VIVA, you can quickly run the command line tool [examples](https://compbiocore.github.io/VariantVisualization.jl/stable/examples/) found in the documentation.
+Note: Once you have set up VIVA, you can quickly run the command line tool [EXAMPLES](https://github.com/compbiocore/VariantVisualization.jl/blob/master/docs/src/examples.md) found in the documentation.
 
 ## *Installation*
 

diff --git a/docs/src/examples.md b/docs/src/examples.md
@@ -11,7 +11,7 @@ Running VIVA with no options produces heatmaps of genotype and read depth values
 ```
 julia VIVA -f test_4X_191.vcf -t Default_Options -s png
 ```
-
+![VIVA Logo](assets/VIVA_logo.png)
 ![Default Genotype Heatmap](assets/Genotype_Default_Options.png)
 
 ![Default Read Depth Heatmap](assets/Read_Depth_Default_Options.png)
@@ -42,6 +42,6 @@ Generate heatmaps of genotype and read depth values of variants selected within
 julia VIVA -f test_4X_191.vcf -t Genomic_Range_Chr4:3076150-3076390 -r chr4:3076150-3076390 -y positions --select_samples select_samples_list.txt -s png
 ```
 
-![Genomic Range Genotype Heatmap](assets/Genotype_Genomic_Range_Chr4/3076150-3076390.png)
-![Genomic Range Read Depth Heatmap](assets/Read_Depth_Genomic_Range_Chr4/3076150-3076390.png)
+![Genomic Range Genotype Heatmap](assets/Genotype_Genomic_Range_Chr4:3076150-3076390.png)
+![Genomic Range Read Depth Heatmap](assets/Read_Depth_Genomic_Range_Chr4:3076150-3076390.png)
 
diff --git a/examples/literate_src/1_viva.jl b/examples/literate_src/1_viva.jl
diff --git a/examples/runexamples.jl b/examples/runexamples.jl
diff --git a/googlefdc38aeb90acee4c.html b/googlefdc38aeb90acee4c.html