Skip to content

GRDI-AMR specification package 5.3.2
Compare
Choose a tag to compare
@cmrn-rhi cmrn-rhi released this 02 Dec 19:23
· 158 commits to main since this release
v5.3.2
42610ae
This commit was created on github.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Verified
Learn about vigilant mode.

🌟 NEW MULTISELECT FUNCTIONALITY - DETAILS BELOW 🌟

Contents:

Data Collection Template 5.3.2
Field and Term Reference Guides 5.3.2
Curation Standard Operating Procedure (SOP) 5.3
New Term Request Standard Operating Procedure (SOP) 1.1

Updates:

  • Multiselect added (see applicable fields below) allowing users to select multiple items. Reselecting an item will remove it from the list provided it isn't the last item (which must be deleted to remove). Currently using ";" (semicolon) separator.
  • File format changed from .xslx to .xslm to allow for VBA macro coding (e.g., additional validation functionality, multiselect).
    • Troubleshooting: If you experience "A potentially dangerous macro has been blocked" warning please disregard this. There is no malicious coding and no features that have not been requested and encoded by the GRDI-AMR workgroup.
    • Troubleshooting: If you are having difficult unblocking on a Windows OS, go to the file in explorer, right-click the file and select "Properties", at the bottom you should see "Security: This file came from another computer and might be blocked to help protect this computer." Select "Unblock" followed by "Apply".
  • Date validation removed and all dat columns reformatted as "Text" to allow dates inputting as yyyy-mm-dd, yyyy-mm, and yyyy.
  • Added an invalid data "warning" to the taxonomic_identification_process column of the Strain and Isolate Information tab.
  • Leading whitespaces removed after indented items are selected from a list (single select and multiselect), they still appear when viewing the drop-down lists.
  • Reference Guides updated: Colour-coding applied to "required" and "recommended" fields and tracking information for deprecated (for the purpose of normalization) labels and IDs (more information in Curation Standard Operating Procedure (SOP) 5.3).
Field Change
environmental_site Multiselect functionality added.
weather_type Multiselect functionality added.
animal_or_plant_population Multiselect functionality added.
environmental_material Multiselect functionality added.
anatomical_material Multiselect functionality added.
body_product Multiselect functionality added.
anatomical_part Multiselect functionality added.
food_product Multiselect functionality added.
food_product_properties Multiselect functionality added.
animal_source_of_food Multiselect functionality added.
food_packaging Multiselect functionality added.
purpose_of_sequencing Multiselect functionality added.
experimental_intervention Multiselect functionality added.
AMR_measurement REMOVED UPON REQUEST.
AMR_phenotype List now applied to all <antibiotic>_phenotype columns and added new terms: Indeterminate antimicrobial phenotype [GENEPIO:0100585], Susceptible dose dependent antimicrobial phenotype [ARO:3004304].

Details can be found under release notes issue #12

Assets 2
Loading