aqua: New snakemake profile.

centre-for-microbiome-research · Jan 14, 2025 · a839d88 · a839d88
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diff --git a/snakemake_configs/aqua/config.v8+.yaml b/snakemake_configs/aqua/config.v8+.yaml
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+executor: cluster-generic
+cluster-generic-submit-cmd: snakemake_mqsub --segregated-log-files --queue aqua
+cluster-generic-status-cmd: snakemake_mqstat
+jobs: 10000
+cluster-generic-cancel-cmd: qdel
+use-conda: true
+conda-frontend: mamba
+rerun-incomplete: true # Without this, snakemake will attempt to resume when rerunning a rule, which fails immediately without error
diff --git a/snakemake_configs/aqua/config.yaml b/snakemake_configs/aqua/config.yaml
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+cluster: snakemake_mqsub --segregated-log-files --queue aqua
+cluster-status: snakemake_mqstat
+jobs: 10000
+cluster-cancel: qdel
+use-conda: true
+conda-frontend: mamba
+rerun-incomplete: true # Without this, snakemake will attempt to resume when rerunning a rule, which fails immediately without error