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Add WDL Workflow: Generate summary reports for malaria samples (#493) Build and deploy site to GitHub Pages #71: Commit 7a51af5 pushed by bridgetknight
February 19, 2025 14:16 2m 41s main
main
February 19, 2025 14:16 2m 41s
Added minimum for miniwdl version to use (#492) Build and deploy site to GitHub Pages #70: Commit d4533d1 pushed by bshifaw
February 18, 2025 16:51 3m 0s main
main
February 18, 2025 16:51 3m 0s
Updated pip cache step to version 4 (#491) Build and deploy site to GitHub Pages #69: Commit 90995b4 pushed by bshifaw
February 11, 2025 15:55 2m 59s main
main
February 11, 2025 15:55 2m 59s
Added DeepTrio Workflow (#490) Build and deploy site to GitHub Pages #68: Commit 1a3a3b7 pushed by jonn-smith
February 10, 2025 21:41 2m 45s main
main
February 10, 2025 21:41 2m 45s
set a single python version in git_pages (#489) Build and deploy site to GitHub Pages #67: Commit 27b638f pushed by bshifaw
February 4, 2025 19:12 3m 36s main
main
February 4, 2025 19:12 3m 36s
Added system deps in nightly test (#488) Build and deploy site to GitHub Pages #66: Commit 6612b2a pushed by bshifaw
February 3, 2025 19:12 1s main
main
February 3, 2025 19:12 1s
Made MarkDuplicates optional to enable Amplicon data processing. (#… Build and deploy site to GitHub Pages #65: Commit 4ed8ff1 pushed by jonn-smith
January 27, 2025 22:03 1s main
main
January 27, 2025 22:03 1s
Updated python version in git actions from 3.7 to 3.13 (#487) Build and deploy site to GitHub Pages #64: Commit 2cf788b pushed by jonn-smith
January 27, 2025 21:43 1s main
main
January 27, 2025 21:43 1s
Fixed typo in zarr output file. (#484) Build and deploy site to GitHub Pages #63: Commit d07b22c pushed by jonn-smith
December 20, 2024 17:13 2m 47s main
main
December 20, 2024 17:13 2m 47s
Made zarr conversion optional in SRJointCallGVCFsWithGenomicsDB.wdl (… Build and deploy site to GitHub Pages #62: Commit 0ab9499 pushed by jonn-smith
December 18, 2024 16:16 2m 54s main
main
December 18, 2024 16:16 2m 54s
Added snpeff_db_identifier for Functional annotation. (#482) Build and deploy site to GitHub Pages #61: Commit b169a39 pushed by jonn-smith
December 13, 2024 14:37 4m 12s main
main
December 13, 2024 14:37 4m 12s
Reserved more non-heap memory for the JVM when calling HaplotypeCalle… Build and deploy site to GitHub Pages #60: Commit 23ee743 pushed by jonn-smith
December 12, 2024 14:45 3m 10s main
main
December 12, 2024 14:45 3m 10s
SRJointCallGVCFsWithGenomicsDB.wdl now prefers dbsnp_vcf to `know… Build and deploy site to GitHub Pages #59: Commit 5c20523 pushed by jonn-smith
December 12, 2024 04:56 2m 52s main
main
December 12, 2024 04:56 2m 52s
Updated SRUtils.BamToFq and SRBamToFq with cram support and bette… Build and deploy site to GitHub Pages #58: Commit b7104df pushed by jonn-smith
December 11, 2024 04:06 2m 54s main
main
December 11, 2024 04:06 2m 54s
Fixed unbound variable error in some cases of QC failure. (#478) Build and deploy site to GitHub Pages #57: Commit e46a4e2 pushed by jonn-smith
December 6, 2024 20:14 2m 47s main
main
December 6, 2024 20:14 2m 47s
Fixed bug when workflow had no inputs/outputs. (#477) Build and deploy site to GitHub Pages #56: Commit 138e8c0 pushed by jonn-smith
December 6, 2024 20:01 2m 45s main
main
December 6, 2024 20:01 2m 45s
Increased minimum boot disk size to 25Gb for all tasks. (#476) Build and deploy site to GitHub Pages #55: Commit 60a7e5e pushed by jonn-smith
November 20, 2024 16:02 3m 0s main
main
November 20, 2024 16:02 3m 0s
Added more QC metrics and a pass / fail assessment to SRFlowcell (#… Build and deploy site to GitHub Pages #54: Commit c209e97 pushed by jonn-smith
November 8, 2024 14:14 2m 50s main
main
November 8, 2024 14:14 2m 50s
Added support for giving background samples to joint calling workflow… Build and deploy site to GitHub Pages #53: Commit cf08477 pushed by jonn-smith
November 7, 2024 01:35 2m 30s main
main
November 7, 2024 01:35 2m 30s
Updates for Malaria pipelines: human read decontamination and WDLs fo… Build and deploy site to GitHub Pages #52: Commit 7c8b7ae pushed by jonn-smith
October 25, 2024 15:56 2m 53s main
main
October 25, 2024 15:56 2m 53s
Updated interval extraction for short read joint calling for sharding… Build and deploy site to GitHub Pages #51: Commit ffe906e pushed by jonn-smith
September 18, 2024 12:12 2m 52s main
main
September 18, 2024 12:12 2m 52s
Fixed JVM memory spec for VariantUtils::AnnotateVcfWithBedRegions (… Build and deploy site to GitHub Pages #50: Commit 0fb95b9 pushed by jonn-smith
September 13, 2024 20:25 2m 46s main
main
September 13, 2024 20:25 2m 46s
Updated drug resistance marker code to account for het genotypes. (… Build and deploy site to GitHub Pages #49: Commit 52868a8 pushed by jonn-smith
August 26, 2024 18:30 2m 42s main
main
August 26, 2024 18:30 2m 42s
Updates to ONT workflows to bring them closer to current conventions … Build and deploy site to GitHub Pages #48: Commit 821e81b pushed by jonn-smith
August 16, 2024 18:56 2m 52s main
main
August 16, 2024 18:56 2m 52s
Hotfix for BackupWorkspace.wdl and minor change to the hrp2/`hrp3… Build and deploy site to GitHub Pages #47: Commit aab3d7a pushed by jonn-smith
August 9, 2024 14:29 2m 23s main
main
August 9, 2024 14:29 2m 23s