Rewrite complex SV functional annotation in SVAnnotate #8516
Codecov / codecov/project
succeeded
Jan 18, 2024 in 0s
86.409% (+0.047%) compared to c9bf941
View this Pull Request on Codecov
86.409% (+0.047%) compared to c9bf941
Details
Codecov Report
Merging #8516 (ee474f1) into master (c9bf941) will increase coverage by
0.047%.
Report is 27 commits behind head on master.
The diff coverage is96.279%.
Additional details and impacted files
@@ Coverage Diff @@
## master #8516 +/- ##
===============================================
+ Coverage 86.362% 86.409% +0.047%
- Complexity 39551 39885 +334
===============================================
Files 2362 2371 +9
Lines 186121 187571 +1450
Branches 20305 20528 +223
===============================================
+ Hits 160738 162079 +1341
- Misses 18236 18267 +31
- Partials 7147 7225 +78 | Files | Coverage Δ | |
|---|---|---|
| ...ender/tools/spark/sv/utils/GATKSVVCFConstants.java | 96.429% <100.000%> (+0.275%) |
⬆️ |
| ...titute/hellbender/tools/walkers/sv/SVAnnotate.java | 98.718% <100.000%> (+0.017%) |
⬆️ |
| ...roadinstitute/hellbender/utils/SimpleInterval.java | 94.737% <100.000%> (+1.555%) |
⬆️ |
| ...der/tools/walkers/sv/SVAnnotateEngineUnitTest.java | 97.443% <100.000%> (+0.878%) |
⬆️ |
| ...er/tools/walkers/sv/SVAnnotateIntegrationTest.java | 79.268% <ø> (ø) |
|
| .../hellbender/tools/walkers/sv/SVAnnotateEngine.java | 90.566% <95.062%> (+1.212%) |
⬆️ |
| ...itute/hellbender/utils/SimpleIntervalUnitTest.java | 88.660% <66.667%> (-1.450%) |
⬇️ |
Loading