Code

365 vat python testing additions#7756

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RoriCremer merged 18 commits intoah_var_storebroadinstitute/gatk:ah_var_storefrom rc-vat-clinvar-updatesbroadinstitute/gatk:rc-vat-clinvar-updatesCopy head branch name to clipboardMay 3, 2022

+1,148-5

Commits

Commits on Apr 28, 2022

• update docker for last half of pipeline wdl

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• manual python test--can i add to docker

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  cf33bc0

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• add json files for expected and test data

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• update test files

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• update python test

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• add vat expected for testing

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• make sure docker does not build if the test fails

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Commits on Apr 29, 2022

• add data for another test

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• short term add test that needs to be refactored for clinvar correction

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Commits on May 2, 2022

• spacing

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• rename python test file

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• fix up on rename

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Commits on May 3, 2022

• update docker

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• Update scripts/variantstore/wdl/extract/test_create_variant_annotation_table.py

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• swap to nulls

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• use with

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• run tests inside docker container

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• spacing

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