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Tweak ingest messaging and failure mode [VS-267] #7680

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merged 6 commits into from
Feb 18, 2022
Merged

Tweak ingest messaging and failure mode [VS-267] #7680

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4f43911
removed retries and updated error message
rsasch Feb 8, 2022
ed70b7f
Merge branch 'ah_var_store' into rsa_ingest_messaging
rsasch Feb 15, 2022
fe2dc59
Merge branch 'ah_var_store' into rsa_ingest_messaging
rsasch Feb 16, 2022
1df4cd9
added table number to message to help with next steps
rsasch Feb 16, 2022
f95ed4a
PR feedback
rsasch Feb 17, 2022
35cfd7a
Merge branch 'ah_var_store' into rsa_ingest_messaging
rsasch Feb 17, 2022
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2 changes: 1 addition & 1 deletion scripts/variantstore/wdl/GvsImportGenomes.wdl
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Expand Up @@ -293,7 +293,7 @@ task LoadData {
>>>
runtime {
docker: docker
maxRetries: 3
maxRetries: 1
memory: "3.75 GB"
disks: "local-disk 50 HDD"
preemptible: select_first([preemptible_tries, 5])
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2 changes: 1 addition & 1 deletion src/main/java/org/broadinstitute/hellbender/tools/gvs/ingest/CreateVariantIngestFiles.java
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Expand Up @@ -229,7 +229,7 @@ public void onTraversalStart() {
logger.info("Sample id " + sampleId + " was detected as already loaded, exiting successfully.");
System.exit(0);
} else if (state == LoadStatus.LoadState.PARTIAL) {
throw new GATKException("Sample Id " + sampleId + " has already been partially loaded!");
throw new GATKException("The loading for sample id " + sampleId + " into the _" + tableNumber + " table(s) was interrupted before it was able to complete successfully.");
}

}
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