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Re-enable IndexFeatureFile test for uncompressed BCF. #6716

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Jul 21, 2020
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Re-enable IndexFeatureFile test for uncompressed BCF. #6716

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5 changes: 2 additions & 3 deletions src/test/java/org/broadinstitute/hellbender/tools/IndexFeatureFileIntegrationTest.java
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Original file line number Diff line number Diff line change
Expand Up @@ -239,8 +239,7 @@ public void testBCFIndex() {
checkIndex(index, Arrays.asList("1"));
}

// test disabled until https://github.com/samtools/htsjdk/issues/1323 is resolved
@Test(enabled = false)
@Test(expectedExceptions = UserException.CouldNotIndexFile.class)
public void testUncompressedBCF2_2Index() {
final File ORIG_FILE = getTestFile("test_variants_for_index.BCF22uncompressed.bcf");
final File outName = createTempFile("test_variants_for_index.BCF22uncompressed.bcf", ".idx");
Expand All @@ -249,7 +248,7 @@ public void testUncompressedBCF2_2Index() {
"-I", ORIG_FILE.getAbsolutePath(),
"-O", outName.getAbsolutePath()
};
final Object res = this.runCommandLine(args);
this.runCommandLine(args);
}

@Test(expectedExceptions = UserException.NoSuitableCodecs.class)
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