Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Remove GATK classes that are redundant with Picard classes. #6678

Merged
merged 2 commits into from
Jun 29, 2020

Conversation

cmnbroad
Copy link
Collaborator

Fixes #3632.

Copy link
Member

@lbergelson lbergelson left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

👍

@cmnbroad cmnbroad merged commit 781bd88 into master Jun 29, 2020
@cmnbroad cmnbroad deleted the cn_sam_comparison branch June 29, 2020 16:18
@cmnbroad
Copy link
Collaborator Author

Thanks @lbergelson !

jonn-smith pushed a commit that referenced this pull request Jul 14, 2020
* Use the modern Picard SamComparison class in favor of GATK's.

* Also remove Transition class (redundant with Picard class of the same name).
mwalker174 pushed a commit that referenced this pull request Nov 3, 2020
* Use the modern Picard SamComparison class in favor of GATK's.

* Also remove Transition class (redundant with Picard class of the same name).
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

Migrate remaining Picard class duplicates to the corresponding Picard classes
2 participants