remove normalization

broadinstitute · Sep 17, 2021 · 7db583f · 7db583f
1 parent 52e4796
commit 7db583f
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/scripts/variantstore/wdl/GvsSitesOnlyVCF.wdl b/scripts/variantstore/wdl/GvsSitesOnlyVCF.wdl
@@ -209,7 +209,7 @@ task ExtractAnAcAfFromVCF {
 
         echo $(date +%s)
 
-        bcftools norm -m- ~{local_input_vcf} > normalized_input.vcf
+        bcftools norm -m- -N ~{local_input_vcf} > normalized_input.vcf
 
         echo $(date +%s)
         du