Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Compile errors with latest ADAM 0.23.0-SNAPSHOT version #55

Closed
heuermh opened this issue Jul 11, 2017 · 0 comments
Closed

Compile errors with latest ADAM 0.23.0-SNAPSHOT version #55

heuermh opened this issue Jul 11, 2017 · 0 comments
Milestone

Comments

@heuermh
Copy link
Member

heuermh commented Jul 11, 2017

...
[ERROR] cannoli/src/main/scala/org/bdgenomics/cannoli/Bwa.scala:199: error: value copy
is not a member of org.bdgenomics.adam.rdd.read.AlignmentRecordRDD
[ERROR] possible cause: maybe a semicolon is missing before `value copy'?
[ERROR]      .copy(recordGroups = RecordGroupDictionary(Seq(RecordGroup(sample, sample))))
[ERROR]       ^
[ERROR] cannoli/src/main/scala/org/bdgenomics/cannoli/Bwa.scala:203: error: value copy
is not a member of org.bdgenomics.adam.rdd.read.AlignmentRecordRDD
[ERROR]      output.copy(sequences = sequences)
[ERROR]             ^
[ERROR] cannoli/src/main/scala/org/bdgenomics/cannoli/util/QuerynameGrouper.scala:32:
error: class FragmentRDD is abstract; cannot be instantiated
[ERROR]    new FragmentRDD(apply(rdd.rdd),
[ERROR]    ^
[ERROR] three errors found
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant