You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
...
[ERROR] cannoli/src/main/scala/org/bdgenomics/cannoli/Bwa.scala:199: error: value copy
is not a member of org.bdgenomics.adam.rdd.read.AlignmentRecordRDD
[ERROR] possible cause: maybe a semicolon is missing before `value copy'?
[ERROR] .copy(recordGroups = RecordGroupDictionary(Seq(RecordGroup(sample, sample))))
[ERROR] ^
[ERROR] cannoli/src/main/scala/org/bdgenomics/cannoli/Bwa.scala:203: error: value copy
is not a member of org.bdgenomics.adam.rdd.read.AlignmentRecordRDD
[ERROR] output.copy(sequences = sequences)
[ERROR] ^
[ERROR] cannoli/src/main/scala/org/bdgenomics/cannoli/util/QuerynameGrouper.scala:32:
error: class FragmentRDD is abstract; cannot be instantiated
[ERROR] new FragmentRDD(apply(rdd.rdd),
[ERROR] ^
[ERROR] three errors found
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
The text was updated successfully, but these errors were encountered:
The text was updated successfully, but these errors were encountered: