Add --rm flag to docker run.

bigdatagenomics · Oct 27, 2017 · fe5b5c9 · fe5b5c9
1 parent 28c32ff
commit fe5b5c9
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/cli/src/main/scala/org/bdgenomics/cannoli/cli/Samtools.scala b/cli/src/main/scala/org/bdgenomics/cannoli/cli/Samtools.scala
@@ -88,6 +88,7 @@ class Samtools(protected val args: SamtoolsArgs) extends BDGSparkCommand[Samtool
     val samtoolsCommand = if (args.useDocker) {
       Seq("docker",
         "run",
+        "--rm",
         args.dockerImage,
         "samtools",
         "mpileup",