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[MISC] Add bep006 and bep010 to completed beps and fix links #186

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merged 4 commits into from
Mar 28, 2019
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[MISC] Add bep006 and bep010 to completed beps and fix links #186

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57f897b
fix link to bep008
sappelhoff Mar 22, 2019
7ab8f7f
add bep006 and bep010 as completed
sappelhoff Mar 22, 2019
f91af24
remove duplicate links
sappelhoff Mar 22, 2019
fcedf9e
add @jasmainak as moderator for bep021
sappelhoff Mar 22, 2019
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72 changes: 37 additions & 35 deletions src/06-extensions.md
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Expand Up @@ -7,16 +7,15 @@ This page lists some ways that you can get involved with the BIDS community.
There are many ways to get involved with the BIDS community!

### The BIDS Starter Kit
If you're new
to the BIDS community and you'd like to learn a bit more, we recommend checking
out the [BIDS Starter Kit](https://github.com/bids-standard/bids-starter-kit/blob/master/README.md).
This has introductory information about the BIDS specification, tools in
the BIDS ecosystem, and how you can get involved.
If you're new to the BIDS community and you'd like to learn a bit more, we
recommend checking out the [BIDS Starter Kit](https://github.com/bids-standard/bids-starter-kit/blob/master/README.md).
This has introductory information about the BIDS specification, tools in the
BIDS ecosystem, and how you can get involved.

### The BIDS Contributor guide

If you'd like to get involved more heavily in helping extend the BIDS
specification or develop tools for it, see the [BIDS Contributor Guide](https://docs.google.com/document/d/1pWmEEY-1-WuwBPNy5tDAxVJYQ9Een4hZJM06tQZg8X4/edit?usp%3Dsharing&sa=D&ust=1537468908724000).
specification or develop tools for it, see the [BIDS Contributor Guide](https://docs.google.com/document/d/1pWmEEY-1-WuwBPNy5tDAxVJYQ9Een4hZJM06tQZg8X4).
It contains more in-depth information for getting involved with the BIDS
community.

Expand All @@ -26,41 +25,44 @@ The BIDS specification can be extended in a backwards compatible way and will
evolve over time. These are accomplished with BIDS Extension Proposals (BEPs),
which are community-driven processes.

Below is a table of currently-active BEPs.
Below is a table of currently-active BEPs. The "Extension label" column
provides a direct link to the documentation.

| Extension label | Title | Moderators/leads |
| :---------------------------------------------------------------------------------------- | :-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | :------------------------------------------------------------- |
| [BEP001](https://docs.google.com/document/d/1QwfHyBzOyFWOLO4u_kkojLpUhW0-4_M7Ubafu9Gf4Gg) | [Structural acquisitions that include multiple contrasts (multi echo, flip angle, inversion time) sequences](https://docs.google.com/document/d/1QwfHyBzOyFWOLO4u_kkojLpUhW0-4_M7Ubafu9Gf4Gg) | Gilles de Hollander |
| [BEP002](https://docs.google.com/document/d/1bq5eNDHTb6Nkx3WUiOBgKvLNnaa5OMcGtD0AZ9yms2M) | [The BIDS Models Specification](https://docs.google.com/document/d/1bq5eNDHTb6Nkx3WUiOBgKvLNnaa5OMcGtD0AZ9yms2M) | Tal Yarkoni |
| [BEP003](https://docs.google.com/document/d/1Wwc4A6Mow4ZPPszDIWfCUCRNstn7d_zzaWPcfcHmgI4) | [Common Derivatives](https://docs.google.com/document/d/1Wwc4A6Mow4ZPPszDIWfCUCRNstn7d_zzaWPcfcHmgI4) | Chris Gorgolewski |
| [BEP004](https://docs.google.com/document/d/1kyw9mGgacNqeMbp4xZet3RnDhcMmf4_BmRgKaOkO2Sc) | [Susceptibility Weighted Imaging (SWI)](https://docs.google.com/document/d/1kyw9mGgacNqeMbp4xZet3RnDhcMmf4_BmRgKaOkO2Sc) | Fidel Alfaro Almagro |
| [BEP005](https://docs.google.com/document/d/15tnn5F10KpgHypaQJNNGiNKsni9035GtDqJzWqkkP6c) | [Arterial Spin Labeling (ASL)](https://docs.google.com/document/d/15tnn5F10KpgHypaQJNNGiNKsni9035GtDqJzWqkkP6c) | Henk-Jan Mutsaerts and Michael Chappell |
| [BEP009](https://docs.google.com/document/d/1mqMLnxVdLwZjDd4ZiWFqjEAmOmfcModA_R535v3eQs0) | [Positron Emission Tomography (PET)](https://docs.google.com/document/d/1mqMLnxVdLwZjDd4ZiWFqjEAmOmfcModA_R535v3eQs0) | Melanie Ganz |
| [BEP011](https://docs.google.com/document/d/1YG2g4UkEio4t_STIBOqYOwneLEs1emHIXbGKynx7V0Y) | [The structural preprocessing derivatives](https://docs.google.com/document/d/1YG2g4UkEio4t_STIBOqYOwneLEs1emHIXbGKynx7V0Y) | Andrew Hoopes |
| [BEP012](https://docs.google.com/document/d/16CvBwVMAs0IMhdoKmlmcm3W8254dQmNARo-7HhE-lJU) | [The functional preprocessing derivatives](https://docs.google.com/document/d/16CvBwVMAs0IMhdoKmlmcm3W8254dQmNARo-7HhE-lJU) | Camille Maumet and Chris Markiewicz |
| [BEP013](https://docs.google.com/document/d/1qBNQimDx6CuvHjbDvuFyBIrf2WRFUOJ-u50canWjjaw) | [The resting state fMRI derivatives](https://docs.google.com/document/d/1qBNQimDx6CuvHjbDvuFyBIrf2WRFUOJ-u50canWjjaw) | Steven Giavasis |
| [BEP014](https://docs.google.com/document/d/11gCzXOPUbYyuQx8fErtMO9tnOKC3kTWiL9axWkkILNE) | [The affine transformations and nonlinear field warps](https://docs.google.com/document/d/11gCzXOPUbYyuQx8fErtMO9tnOKC3kTWiL9axWkkILNE) | Oscar Esteban |
| [BEP015](https://docs.google.com/document/d/1WYOTXDB7GzlHoWqLjd45I3uGBgPxXddST-NTqBnroJE) | [Mapping file](https://docs.google.com/document/d/1WYOTXDB7GzlHoWqLjd45I3uGBgPxXddST-NTqBnroJE) | Eric Earl, Camille Maumet, and Vasudev Raguram |
| [BEP016](https://docs.google.com/document/d/1cQYBvToU7tUEtWMLMwXUCB_T8gebCotE1OczUpMYW60) | [The diffusion weighted imaging derivatives](https://docs.google.com/document/d/1cQYBvToU7tUEtWMLMwXUCB_T8gebCotE1OczUpMYW60) | Franco Pestilli and Oscar Esteban |
| [BEP017](https://docs.google.com/document/d/1ugBdUF6dhElXdj3u9vw0iWjE6f_Bibsro3ah7sRV0GA) | [Generic BIDS connectivity data schema](https://docs.google.com/document/d/1ugBdUF6dhElXdj3u9vw0iWjE6f_Bibsro3ah7sRV0GA) | Eugene Duff and Paul McCarthy |
| [BEP018](https://docs.google.com/document/d/1uRkgyzESLKuGjXi98Z97Wh6vt-iLN5nOAb9TG16CjUs) | [Genetic information](https://docs.google.com/document/d/1uRkgyzESLKuGjXi98Z97Wh6vt-iLN5nOAb9TG16CjUs) | Cyril R Pernet, Clara Moreau, and Thomas Nichols |
| [BEP019](https://docs.google.com/document/d/1FqJI791ycXr0bfRg2qyLqAf0RpVttJ2cInOgMWrKsNU) | [DICOM Metadata](https://docs.google.com/document/d/1FqJI791ycXr0bfRg2qyLqAf0RpVttJ2cInOgMWrKsNU) | Satrajit Ghosh |
| [BEP020](https://docs.google.com/document/d/1eggzTCzSHG3AEKhtnEDbcdk-2avXN6I94X8aUPEBVsw) | [Eye Tracking including Gaze Position and Pupil Size(ET)](https://docs.google.com/document/d/1eggzTCzSHG3AEKhtnEDbcdk-2avXN6I94X8aUPEBVsw) | Benjamin Gagl and Dejan Draschkow |
| [BEP021](https://docs.google.com/document/d/1PmcVs7vg7Th-cGC-UrX8rAhKUHIzOI-uIOh69_mvdlw) | [Common Electrophysiological Derivatives](https://docs.google.com/document/d/1PmcVs7vg7Th-cGC-UrX8rAhKUHIzOI-uIOh69_mvdlw) | Stefan Appelhoff, Cyril Pernet, Robert Oostenveld, Teon Brooks |
| [BEP022](https://docs.google.com/document/d/1pWCb02YNv5W-UZZja24fZrdXLm4X7knXMiZI7E2z7mY) | [Magnetic Resonance Spectroscopy (MRS)](https://docs.google.com/document/d/1pWCb02YNv5W-UZZja24fZrdXLm4X7knXMiZI7E2z7mY) | Dickson Wong |
| [BEP023](https://docs.google.com/document/d/1yzsd1J9GT-aA0DWhdlgNr5LCu6_gvbjLyfvYq2FuxlY) | [PET Preprocessing derivatives](https://docs.google.com/document/d/1yzsd1J9GT-aA0DWhdlgNr5LCu6_gvbjLyfvYq2FuxlY) | Martin Noergaard, Graham Searle, Melanie Ganz |
| [BEP024](https://docs.google.com/document/d/1fqnJZ18x5LJC8jiJ8yvPHUGFzNBZ6gW2kywYrUKWtuo) | [Computed Tomography scan (CT)](https://docs.google.com/document/d/1fqnJZ18x5LJC8jiJ8yvPHUGFzNBZ6gW2kywYrUKWtuo) | Hugo Boniface |
| [BEP025](https://docs.google.com/document/d/1chZv7vAPE-ebPDxMktfI9i1OkLNR2FELIfpVYsaZPr4) | [Medical Population Imaging Data structure (MIDS)](https://docs.google.com/document/d/1chZv7vAPE-ebPDxMktfI9i1OkLNR2FELIfpVYsaZPr4) | Jose Manuel Saborit Torres |
| [BEP026](https://docs.google.com/document/d/14KC1d5-Lx-7ZSMtwS7pVAAvz-2WR_uoo5FvsNirzqJw) | [Microelectrode Recordings (MER)](https://docs.google.com/document/d/14KC1d5-Lx-7ZSMtwS7pVAAvz-2WR_uoo5FvsNirzqJw) | Greydon Gilmore |
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This may have some unintended conflicts with the derivatives merge due to the mismatch of this file. I don't want to add more challenges to that PR. Perhaps after that is merged this can be merged? Thank you for putting together this PR nonetheless!

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I see what you mean - thanks: I wasn't aware that there are lots of changes in the derivatives PR

https://github.com/bids-standard/bids-specification/pull/109/files#diff-2a8145214cd54ad2715d4543399df795

I guess @chrisfilo can make the call whether we should wait with this or we can go on with it, because he'd be the one who'd have to rebase the derivatives PR.

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I would not recommend any PR to wait for #109. I am syncing it with master on a regular basis and will deal with any conflicts.

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Given @chrisfilo's comment, could you review/approve once more @franklin-feingold ?

also: @jasmainak perhaps you could give this a quick glance. It's nothing special, but I am adding your name as a moderator of BEP021, so this is your chance to protest or approve :-)

or protestingly approve

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you know the perils of asking me to review :-) do we have renewed interest in BEP021? so far I have just been replying to people ... maybe we can look at it once the iEEG/EEG publications go through!

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I think we do have interest in BEP021, but I also think we should gather some more experience with EEG and iEEG before moving on with 100% force ;-)

re: your review of this PR: Could you make use of the GitHub tool and approve (or disapprove)? We have community guidlines (and GH settings) here that require that as a formality.

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@jasmainak

| Extension label | Title | Moderators/leads |
| :---------------------------------------------------------------------------------------- | :--------------------------------------------------------------------------------------------------------- | :------------------------------------------------------------------------- |
| [BEP001](https://docs.google.com/document/d/1QwfHyBzOyFWOLO4u_kkojLpUhW0-4_M7Ubafu9Gf4Gg) | Structural acquisitions that include multiple contrasts (multi echo, flip angle, inversion time) sequences | Gilles de Hollander |
| [BEP002](https://docs.google.com/document/d/1bq5eNDHTb6Nkx3WUiOBgKvLNnaa5OMcGtD0AZ9yms2M) | The BIDS Models Specification | Tal Yarkoni |
| [BEP003](https://docs.google.com/document/d/1Wwc4A6Mow4ZPPszDIWfCUCRNstn7d_zzaWPcfcHmgI4) | Common Derivatives | Chris Gorgolewski |
| [BEP004](https://docs.google.com/document/d/1kyw9mGgacNqeMbp4xZet3RnDhcMmf4_BmRgKaOkO2Sc) | Susceptibility Weighted Imaging (SWI) | Fidel Alfaro Almagro |
| [BEP005](https://docs.google.com/document/d/15tnn5F10KpgHypaQJNNGiNKsni9035GtDqJzWqkkP6c) | Arterial Spin Labeling (ASL) | Henk-Jan Mutsaerts and Michael Chappell |
| [BEP009](https://docs.google.com/document/d/1mqMLnxVdLwZjDd4ZiWFqjEAmOmfcModA_R535v3eQs0) | Positron Emission Tomography (PET) | Melanie Ganz |
| [BEP011](https://docs.google.com/document/d/1YG2g4UkEio4t_STIBOqYOwneLEs1emHIXbGKynx7V0Y) | The structural preprocessing derivatives | Andrew Hoopes |
| [BEP012](https://docs.google.com/document/d/16CvBwVMAs0IMhdoKmlmcm3W8254dQmNARo-7HhE-lJU) | The functional preprocessing derivatives | Camille Maumet and Chris Markiewicz |
| [BEP013](https://docs.google.com/document/d/1qBNQimDx6CuvHjbDvuFyBIrf2WRFUOJ-u50canWjjaw) | The resting state fMRI derivatives | Steven Giavasis |
| [BEP014](https://docs.google.com/document/d/11gCzXOPUbYyuQx8fErtMO9tnOKC3kTWiL9axWkkILNE) | The affine transformations and nonlinear field warps | Oscar Esteban |
| [BEP015](https://docs.google.com/document/d/1WYOTXDB7GzlHoWqLjd45I3uGBgPxXddST-NTqBnroJE) | Mapping file | Eric Earl, Camille Maumet, and Vasudev Raguram |
| [BEP016](https://docs.google.com/document/d/1cQYBvToU7tUEtWMLMwXUCB_T8gebCotE1OczUpMYW60) | The diffusion weighted imaging derivatives | Franco Pestilli and Oscar Esteban |
| [BEP017](https://docs.google.com/document/d/1ugBdUF6dhElXdj3u9vw0iWjE6f_Bibsro3ah7sRV0GA) | Generic BIDS connectivity data schema | Eugene Duff and Paul McCarthy |
| [BEP018](https://docs.google.com/document/d/1uRkgyzESLKuGjXi98Z97Wh6vt-iLN5nOAb9TG16CjUs) | Genetic information | Cyril R Pernet, Clara Moreau, and Thomas Nichols |
| [BEP019](https://docs.google.com/document/d/1FqJI791ycXr0bfRg2qyLqAf0RpVttJ2cInOgMWrKsNU) | DICOM Metadata | Satrajit Ghosh |
| [BEP020](https://docs.google.com/document/d/1eggzTCzSHG3AEKhtnEDbcdk-2avXN6I94X8aUPEBVsw) | Eye Tracking including Gaze Position and Pupil Size(ET) | Benjamin Gagl and Dejan Draschkow |
| [BEP021](https://docs.google.com/document/d/1PmcVs7vg7Th-cGC-UrX8rAhKUHIzOI-uIOh69_mvdlw) | Common Electrophysiological Derivatives | Mainak Jas, Stefan Appelhoff, Cyril Pernet, Robert Oostenveld, Teon Brooks |
| [BEP022](https://docs.google.com/document/d/1pWCb02YNv5W-UZZja24fZrdXLm4X7knXMiZI7E2z7mY) | Magnetic Resonance Spectroscopy (MRS) | Dickson Wong |
| [BEP023](https://docs.google.com/document/d/1yzsd1J9GT-aA0DWhdlgNr5LCu6_gvbjLyfvYq2FuxlY) | PET Preprocessing derivatives | Martin Noergaard, Graham Searle, Melanie Ganz |
| [BEP024](https://docs.google.com/document/d/1fqnJZ18x5LJC8jiJ8yvPHUGFzNBZ6gW2kywYrUKWtuo) | Computed Tomography scan (CT) | Hugo Boniface |
| [BEP025](https://docs.google.com/document/d/1chZv7vAPE-ebPDxMktfI9i1OkLNR2FELIfpVYsaZPr4) | Medical Population Imaging Data structure (MIDS) | Jose Manuel Saborit Torres |
| [BEP026](https://docs.google.com/document/d/14KC1d5-Lx-7ZSMtwS7pVAAvz-2WR_uoo5FvsNirzqJw) | Microelectrode Recordings (MER) | Greydon Gilmore |

When an extension reaches maturity it is merged into the main body of the
specification. Below is a table of BEPs that have been merged in the main body
of the specification.

| Extension label | Title | Moderators/leads |
| :---------------------------------------------------------------------------------------- | :-------------------------------------------------------------------------------------------------------------- | :------------------------------------------------------ |
| [BEP008](https://docs.google.com/document/d/1FWex_kSPWVh_f4rKgd5rxJmxlboAPtQlmBc1gyZlRZM) | [Magnetoencephalography (MEG)](https://docs.google.com/document/d/1QwfHyBzOyFWOLO4u_kkojLpUhW0-4_M7Ubafu9Gf4Gg) | Guiomar Niso |
| Extension label | Title | Moderators/leads |
| :---------------------------------------------------------------------------------------- | :----------------------------------------- | :------------------------------------------------ |
| [BEP006](https://docs.google.com/document/d/1ArMZ9Y_quTKXC-jNXZksnedK2VHHoKP3HCeO5HPcgLE) | Electroencephalograpgy (EEG) | Cyril Pernet, Stefan Appelhoff, Robert Oostenveld |
| [BEP008](https://docs.google.com/document/d/1FWex_kSPWVh_f4rKgd5rxJmxlboAPtQlmBc1gyZlRZM) | Magnetoencephalography (MEG) | Guiomar Niso |
| [BEP010](https://docs.google.com/document/d/1qMUkoaXzRMlJuOcfTYNr3fTsrl4SewWjffjMD5Ew6GY) | intracranial Electroencephalograpgy (iEEG) | Chris Holdgraf, Dora Hermes |

All of the extension ideas that are not backwards compatible and thus
will have to wait for BIDS 2.0 are listed
[here](https://docs.google.com/document/d/1LEgsMiisGDe1Gv-hBp1EcLmoz7AlKj6VYULUgDD3Zdw)
[here](https://docs.google.com/document/d/1LEgsMiisGDe1Gv-hBp1EcLmoz7AlKj6VYULUgDD3Zdw).